RNA id: XM_039802527.1


Basic Information

Item Value
RNA id XM_039802527.1
length 2166
RNA type mRNA
GC content 0.54
exon number 17
gene id chek2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 43002255 ~ 43025050 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACGGCTCAGCCCGCTTCGTCCTGGCGGTGTATATGAAGCAGCTCGGCGGGTAGGGAGCGGATTTGGAGCCCGGCTGCTGGGCGGGGTTAGTGACCCAGAACGGTACTGAGCCGGTTCTGGTCCCAGATCAGTTTTCATCTGCATCTCCGATACCGTCagtttgaaataaaaacatctCAGCCATCGACGGGCTCCATTAAAAAAACAGCTAATTTAACGTCGCCTTGTTCGCATGATAATATAGACGCTGTTGGATGTGACTGAAGAGAGATGAGGCCCCTCTTTAAAAACTTGAATGTTATTTCATGTTGACATTACGCCGAATTAAGGAGAAGACTATTAGATATTTGGAGGAATTTCCGCTCTTGTTGTCTACGTTCGTATTAGCTGGAAGATGTCTGAAGAGATTCCACATGAGGGGGAGCAGCCCCAGACCACTCAGTCTACCCAGTCCACCCTGTCCCAGGCCCAGTCTACCCAGTCCACCCTGTCCCAGCCCCAGTCTACCCAGTCTCCGTCCCAGGCCCAGTCTACCCAGTCTCCGTCCCAGGCCCAGTCTACCCAGTCTCCGTCCCAGGCCCAGTCTACCCAGTCTGCGTCCCAGGCCCAGTCCACCCAGCCTAAGTCCCAGACTGGTTCCAGTTCTTCCAGCGGGCCGAGGTCTTCCAGCGGCTCGGGGACCCTGAGCAGCGTGGACACCATTCCCGTGACGCTGGCGTCCGTCCCCGAGGAGCCCGAGCCTCAGCCGTGGGGCCGCCTGCTGCCGATGGCCCAGGGCTTCAGGAGCCTCGACTGTCTAGAGGACCAGTATCTGTTCGGCCGGGGGTCCAAGTGTAACTACGTTCTGGACGATCCCGATGAAAAAGGATCCAAAAAGTTCAGAATCTACAGCAAGAAACACTTCAGGATCTACAGAgaGGGCAGTGAGGTGTTCGTGGAGGACTCCAGTAACACGGGACCCTGTGGGCAGTGCTGGTGAGTAGAAGACAGGAAGCTTCCTCTGACCAACAACGCTGTGCTGGCTGGCTGAGCAACCAACAGAGtctttgTGTTCATCGACCTGATGTCAGCTGATGAGTCCAGCTTACCCAGAGAGCTTCAGGAGAAATCGTTCGGACTTACTATCCGGCACaGGAGTGTGTGGGGAGTTAAACTGGCCTTAGAGATGTCGTGCAGGAAGTTTGCCGTGAAAATAATTAATAAGAAGAACTTTCAGTCTGAAGGGACCGCGACGAGAAACGCGCAAACTGAGATTCAAATTCTGCAGAGAGTCGACCACCCATGTCTGATTAAAACAGAGGATTTCTATCAGACGGAGGACAGTTACTACATTGTGTTGGAGCTgatggagggaggagagttGTTTCACCGAGTTAAATCTCAGCAGCAGCTCGATGAGTCTGTCGCCAAACTGTATTTTTATCAGATGCTGAGAGCGGTCAAGtacCTCCACAGTGAAGGGATCATCCACAGAGATCTGAAACCGGAGAACATCCTGCTGTCCTCGCAGGACAACGAGTGTCTCATCAAGgtgACAGACTTCAACCAGTCCCGGATCCTGGGCGAGTCCCTGCTGATGAGGAGTCTGTGTGGGACGCCCTCCTACCCTCCTGAAGTCTTCACGTCCACGTCGGGATACGGGCTGGCCGTGGACGCGTGGAGCCTCGGAGTCCTGCTCTTCGTCTGtctgGGTGGTTATCCTCCGTTCCATGAAAACTTCAGCCGCCAGTCGATCACGGAGCAGATCATCCGCGGAGAGTTCACCATGGTGCCGTCCAAATGGAAACACATCTCTGACCCAGCTaAGGATGTGGTCAGGAAGCTGCTGGTAGTTGACCCCAGTAAGAGGATGACTATAGATGAAGCTCTGCAGCATCCCTGGCTCCAGGATGATGTCATGATGAAGACGGCTCACAGACTCATGTTCCCCCCCGacgctgatgctgctgctgccgccgctgccatgcagGAAGTGGAGTCAGCCTCCGGGAGGAAACGAGGACGCggtgaaggagaagaagaagaggaaccTCCAGCCAAACGCagccaagccccgccccctgcCCCGGAGTAGACCAATCACACTCAGCCACGTGTTCACTACTGAAACGCTGTAAATAAAGTTTACATTGATTGCTAATAAAGCCTTTTATGTTTTCCACTC

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K06641 CHEK2; serine/threonine-protein kinase CHEK2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639465.1 lncRNA downstream 30872 42970466 ~ 42971625 (-) True LOC120560258
TU92686 lncRNA downstream 183163 42780818 ~ 42819334 (-) True G69184
XR_005639461.1 lncRNA downstream 231064 42768404 ~ 42771433 (-) True LOC120560255
XR_005639462.1 lncRNA downstream 233183 42768403 ~ 42769314 (-) False LOC120560255
TU92694 lncRNA downstream 298505 42696173 ~ 42703992 (-) True G69189
TU92785 lncRNA upstream 12497 43037547 ~ 43038477 (-) True G69258
TU92793 lncRNA upstream 51205 43076255 ~ 43076982 (-) False card9
TU92796 lncRNA upstream 64591 43089641 ~ 43091900 (-) True G69266
TU92772 lncRNA upstream 78910 43103960 ~ 43104752 (-) True G69246
TU92771 lncRNA upstream 78946 43103996 ~ 43104519 (-) False G69246
XM_039802439.1 mRNA downstream 44224 42873897 ~ 42958273 (-) False LOC120560194
XM_039802438.1 mRNA downstream 44224 42873897 ~ 42958273 (-) True LOC120560194
XM_039804065.1 mRNA downstream 148155 42822405 ~ 42854342 (-) True LOC120561115
XM_039802518.1 mRNA downstream 179852 42819874 ~ 42822645 (-) True LOC120560237
XM_039804064.1 mRNA downstream 192908 42663363 ~ 42809589 (-) True LOC120561114
XM_039804068.1 mRNA upstream 51180 43076230 ~ 43099165 (-) True card9
XM_039802523.1 mRNA upstream 80292 43105342 ~ 43141553 (-) True snapc4
XM_039802524.1 mRNA upstream 118338 43143388 ~ 43178989 (-) True pomt1
XM_039804069.1 mRNA upstream 198427 43223477 ~ 43251312 (-) True LOC120561119
XM_039804070.1 mRNA upstream 276569 43301619 ~ 43304446 (-) True LOC120561120
TU92678 other downstream 192875 42772991 ~ 42809622 (-) False LOC120561114
TU92624 other downstream 466422 42535267 ~ 42536075 (-) False G69140
TU92567 other downstream 869916 42130611 ~ 42132581 (-) True G69105
TU92299 other downstream 886236 42107630 ~ 42116261 (-) True G68921
TU92794 other upstream 52802 43077852 ~ 43088827 (-) False card9
TU92756 other upstream 148115 43173165 ~ 43178971 (-) False pomt1
TU92775 other upstream 185969 43211019 ~ 43218894 (-) True G69249
TU92812 other upstream 225708 43250758 ~ 43251295 (-) False LOC120561119
TU92928 other upstream 346717 43371767 ~ 43380599 (-) True G69356

Expression Profile