RNA id: XM_039802524.1


Basic Information

Item Value
RNA id XM_039802524.1
length 2449
RNA type mRNA
GC content 0.57
exon number 20
gene id pomt1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 43143388 ~ 43178989 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAGCAGCAACAGAGCAGGCAGCACCAACCGAGCACCGGAACCATCGAGCGGCCGCTGCAGCAAACTAACCGGAGAAAACGGCTCGCAGCTACCGACCGGAGCAGCTGGAGCCACCGGAGGACAACCGACACCTTTACCGACAGCATGCACGGTTCAGGGGTAACGGAGTGACGTCACAAGctgTGTCAGGATGCTGCAGCTCCCCCTGGTGGTGACGGCTGAGGTGGACTTGGTCCTGCTGCtggtctccttcctctctctctggacCAGACTCACCCAGCTGGGATACCCCAACAATGTGGtgtttgaTGAGGTGTACTACGGCCAGTTTGTGTCTCTCTACATGAAGAGAGTGTTCTTCATCGATGACAGCGGGCCGCCGCTCGGTCACATGATCCTGGCCCTCGGAGcgtACCTCGGAGGATTTGATGGAAACTTTGTGTGGAACAGAATCGGAGCAGAGTACCCCAGCAGTGTGAGCGTGGTGTGTCTGCGTCTCCTCCCGGCTCTCTGTGGCGCTCTGTGTGTTCCTCTGGTCTACCTGCTGACCCTGGAGCTCAAGTTCTCTCACCTGTCGGCTCTGGGAGCcgccgtgctgctgctgctcgAGAACTCCCTGATCGTCCAATCACGGTTCATGTTACTGGAGTCTGTTCTCATCTTCTTCGTGCTGCTGGCCTTCTTCTCCTACCTCAAGTTCCACAACGCTGCCCCCGACAGCGTCTTCAGGTTCGGGTGGCTGCTCCTCTCTGGAGCTGCGTGTGCCGTCACggtgaAGTATATGGGGGTGTTCTcctacctgctgctgctgggcgTGGCTTCTCTGCACACCTGGAACCTGATTGGAGATCGAACCGTCAGTCACGTGAGTgtgtgtgtgcagtgtgtgtgtcgggCTGTGTGTCTGCTCGTGGTTCCTCTCCTTCTCTACGTGTTCTGGTTCTACGTCCACCTGACTCTGCTGCACCGTAGCGGACCGCACGACCAGCTGATGAGCTCCGCCTTCCAGGCCAGTCtggagggtggtCTCTCCAGGATCACTCAGGGTCAGCCTCTGGAAGTGGCTTACGGCAGTCAGGTGACTTTAAGAAGCTCCTCCTCCCAGCCAATCCCCTGCTGGCTCCACTCGCACAAAGTCAACTACCCAATCAGGTATGAGAATGGGCGGGGCAGCTCTCACCAGCAGCAGGTCACATGTTACCCTTTCAAAGACGTCAACAACTGGTGGATCATCAAAGACCCCGACAGACAGGATCTGGTGGTCAGCAGTCCTCCTCGACCAGTGCGTCACGGTGATGTCATCCAGCTGCTTCATGGGATGACATCACGCTTCCTCAACAGtcaTGATGTAGCAGCTCCCATGAGCCCTCACTCTCAGGAAGTGTCGGGTTACATTGACTTCAACGTCTCCATGGCAGCTCAGAACCTGTGGAGAGtgGACGTCCTGAACAGGGAGGCGGAGTCAGAGTCCTGGAAGACCATCCTGTCTGACGTCCGATTGGTCCACGTCAACACCTCGGCTGTCCTCAAGctgagtGGTGTGTCTCTTCCAGATTGGGGTTTCCGTCAGCTGGAGGTGGTAGCAgagaaacagtttaaatctcAGAGTGTTGGCTGGACCGTCGAGGAGCACCGATATGGAACCAgtcagGAGCAGAAGGAGAGGGAGGCGGAGCTTCACTCTCCGACCCACATCGACGTCGACAGAAAGATTTCCTTCTGGGCCAAATTCTTAGAACTTCAGtGGAAGATGCTGACGGTGAAACAGGAGGACTCGGAGCACAAATACAGCTCCTCCCCCCTCGAATGGGTTACCATGGAGACCAACATTGCATACTGGCTGCACTCGTCCACCAACGCTCAGATCCATCTGATTGGTAACCCGGTGTCGTGGGGCGTGGCCAACCTCAGCCTGCTGGCCTATCAGCTGCTGGCAGCAATCTACCTGCTGAGGAGGAGGCGGGGCTTCAAAGACCTCCCTgatgctgcgTGGGGTCAGTTTGTGTgtctggggtgtgtgtgtgttggtggctGGTTGGTGAACGTGGTCCCGTTCCTCCTGATGGAGAAAACTCTCTTCCTGTATCACTACCTGCCGGCTCTCTGCTACCTGCACCTGCTGAGCCCCGCCCTGctggagcacacacacactcacctgctcagCAGAGCGACACACCGGcgtgcgctgtgtgtgtgcgtgacggCCGTGCTGGTGTCGGTCTTCCTGTCCTATCGGACGTTCTGCCCTTTGACCTACGGCAGCCCCGAGCTGTCAGCCAATCAGCTGCAAGGACTCAAGTGGAGAGATTCCTGGGACATCCTGTACCGTCGTcgctagacagacagacagagacagacagacagacagacagacagacagacagagacggagacagacagacagacacggagacagacagacagacagacagacagacagacagaca

Function

GO:

id name namespace
GO:0035269 protein O-linked mannosylation biological_process
GO:0016020 membrane cellular_component
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity molecular_function

KEGG:

id description
K00728 POMT, pmt; dolichyl-phosphate-mannose-protein mannosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92772 lncRNA downstream 38636 43103960 ~ 43104752 (-) True G69246
TU92771 lncRNA downstream 38869 43103996 ~ 43104519 (-) False G69246
TU92796 lncRNA downstream 51488 43089641 ~ 43091900 (-) True G69266
TU92793 lncRNA downstream 66406 43076255 ~ 43076982 (-) False card9
TU92785 lncRNA downstream 104911 43037547 ~ 43038477 (-) True G69258
TU92808 lncRNA upstream 24672 43203661 ~ 43225724 (-) True G69272
TU92810 lncRNA upstream 46946 43225935 ~ 43226903 (-) True G69273
TU92911 lncRNA upstream 87828 43266817 ~ 43450492 (-) True G69340
TU92913 lncRNA upstream 95490 43274479 ~ 43275772 (-) True G69342
TU92910 lncRNA upstream 207169 43386158 ~ 43396705 (-) False G69339
XM_039802523.1 mRNA downstream 1835 43105342 ~ 43141553 (-) True snapc4
XM_039804068.1 mRNA downstream 44223 43076230 ~ 43099165 (-) True card9
XM_039802527.1 mRNA downstream 118338 43002497 ~ 43025050 (-) True chek2
XM_039802439.1 mRNA downstream 185115 42873897 ~ 42958273 (-) False LOC120560194
XM_039802438.1 mRNA downstream 185115 42873897 ~ 42958273 (-) True LOC120560194
XM_039804069.1 mRNA upstream 44488 43223477 ~ 43251312 (-) True LOC120561119
XM_039804070.1 mRNA upstream 122630 43301619 ~ 43304446 (-) True LOC120561120
XM_039804071.1 mRNA upstream 129359 43308348 ~ 43310847 (-) True LOC120561121
XM_039802458.1 mRNA upstream 301972 43480961 ~ 43528118 (-) True LOC120560199
XM_039802460.1 mRNA upstream 301972 43480961 ~ 43527562 (-) False LOC120560199
TU92794 other downstream 54561 43077852 ~ 43088827 (-) False card9
TU92737 other downstream 125137 43004586 ~ 43018251 (-) False chek2
TU92739 other downstream 129323 42970084 ~ 43014065 (-) False G69229
TU92775 other upstream 32030 43211019 ~ 43218894 (-) True G69249
TU92812 other upstream 71769 43250758 ~ 43251295 (-) False LOC120561119
TU92928 other upstream 192778 43371767 ~ 43380599 (-) True G69356
TU92966 other upstream 362254 43541243 ~ 43546558 (-) False phf19
TU93018 other upstream 501487 43680476 ~ 43709236 (-) False LOC120560198

Expression Profile