RNA id: TU92785



Basic Information


Item Value
RNA id TU92785
length 895
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G69258
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 43037547 ~ 43038477 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


actcaatacaaaaaaaacacattgctaTAATccaaccgaccaatcagcagccaGCATTTCCTCCGcctgctgtgatgtcatcaaacGTCAGGATCTTcactttcagaataaaatgccTGAGAGGACAAATGTCTCCCGTCTGAGGGTGATGCTAGATCACACCCGCTGGACGAGTCAACGTCAACAGACGCTACATGTGGCTACATgctaatggggggggggggggctgcagaTGACATGTTGAACTTATTTAACTTTGTCCTAACAGCATGACATGTGGTACAGGACACGTGGACAGTGTTCAGAAATGGAGCCATCCCATTGGTTCAGAAGCATTTAGTGTATTGGTAGAAGTGCAGCTACAGCCAGTCTCCAGCTTCATGTTGTAGCAGGACCACGTGCTGAGGTGTGCCGTGTTGACGTGTTGGTGTGGAGACGTGTTGCCGTGGAGACGTCCAGCGGGCCGGACCAGACCGGGTCCGGAGCAGTCTGAGCGTGTGCAGGACTTCAGGACTCTGGGTCCAGGTCTGAGATCTTATCAATGGACTGAAGCAGCTGAGACACGAGACACAGAGTCTCTGCTTCTCCCAACAGAcggctagagacagacagacagacagtgagacagacaggcagagagacagacagacagtgagacagacaggcagagagacaggcaggcagtgagacagacaggcaggcagagacaggcaggcagtgagacagacaggcagacaggcagtgagacagacaggcagtgagacagacaggcagagagacagacagacagtgagacagacaggcagagagacaggcaggcagtgagacagacaggcaggcagagagacagacagacagagagacaggcaggcagtgagacagacaggcagacagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92780 lncRNA downstream 14709 43021132 ~ 43022838 (-) True G69254
TU92740 lncRNA downstream 23482 42971126 ~ 43014065 (-) True G69229
XR_005639465.1 lncRNA downstream 65922 42970466 ~ 42971625 (-) True LOC120560258
TU92686 lncRNA downstream 218213 42780818 ~ 42819334 (-) True G69184
XR_005639461.1 lncRNA downstream 266114 42768404 ~ 42771433 (-) True LOC120560255
TU92793 lncRNA upstream 37778 43076255 ~ 43076982 (-) False card9
TU92796 lncRNA upstream 51164 43089641 ~ 43091900 (-) True G69266
TU92772 lncRNA upstream 65483 43103960 ~ 43104752 (-) True G69246
TU92771 lncRNA upstream 65519 43103996 ~ 43104519 (-) False G69246
TU92802 lncRNA upstream 113385 43151862 ~ 43152875 (-) False G69271
XM_039802527.1 mRNA downstream 12497 43002497 ~ 43025050 (-) True chek2
XM_039802439.1 mRNA downstream 79274 42873897 ~ 42958273 (-) False LOC120560194
XM_039802438.1 mRNA downstream 79274 42873897 ~ 42958273 (-) True LOC120560194
XM_039804065.1 mRNA downstream 183205 42822405 ~ 42854342 (-) True LOC120561115
XM_039802518.1 mRNA downstream 214902 42819874 ~ 42822645 (-) True LOC120560237
XM_039804068.1 mRNA upstream 37753 43076230 ~ 43099165 (-) True card9
XM_039802523.1 mRNA upstream 66865 43105342 ~ 43141553 (-) True snapc4
XM_039802524.1 mRNA upstream 104911 43143388 ~ 43178989 (-) True pomt1
XM_039804069.1 mRNA upstream 185000 43223477 ~ 43251312 (-) True LOC120561119
XM_039804070.1 mRNA upstream 263142 43301619 ~ 43304446 (-) True LOC120561120
TU92737 other downstream 19296 43004586 ~ 43018251 (-) False chek2
TU92739 other downstream 23482 42970084 ~ 43014065 (-) False G69229
TU92741 other downstream 23482 42970084 ~ 43014065 (-) False G69229
TU92743 other downstream 34200 43002255 ~ 43003347 (-) False chek2
TU92678 other downstream 227925 42772991 ~ 42809622 (-) False LOC120561114
TU92794 other upstream 39375 43077852 ~ 43088827 (-) False card9
TU92756 other upstream 134688 43173165 ~ 43178971 (-) False pomt1
TU92775 other upstream 172542 43211019 ~ 43218894 (-) True G69249
TU92812 other upstream 212281 43250758 ~ 43251295 (-) False LOC120561119
TU92928 other upstream 333290 43371767 ~ 43380599 (-) True G69356

Expression Profile