RNA id: XM_039804068.1


Basic Information

Item Value
RNA id XM_039804068.1
length 1929
RNA type mRNA
GC content 0.55
exon number 16
gene id card9
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 43076230 ~ 43099165 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCAGTCAGCAGACTGCTCTCTCTGTGTTCAGTGTGTAACAGTCCAGGAGTCAGAGTTAGGGGGAGTTTTAGGAGAGAAACAGCAGTTAGGGTGAGTTTTAGGGGAGAGTTTTGGGGGTGAGTTTTAGGGGAGAGTTTTaggggagagatggagggggTGAGTGAGGACGATCTGTGCTGGCTACAGCTGGATGATTTCAGGATGCTGCTCATCAAAACCATCGAGCCCTCCAGGATCACCCCGTACCTCCGCCAGTGCCAGgtgatCAGTGCTGAGGATGAGGAGCAGCTCTTCAACGACCCCGGCCTCGTCATCAGGAGGAGGAAAGTCGGAGCCCTGCTGGACATCCTGCAGAGGACCGGGGTCAAAGGTTACACAGCGTTCCTGGAGAGTCTGGAGCTGGACTATCCTCAGCTGTACAGCCGCATCACAGGGAAGGAACCCAACAAGACCTTCAGCATCCTCATAGATACAGCAGGTGAATCTGGTctgactgcctaTACAGCAGAAGATGTCATCATCTTCTGGATCTCCTCAGACTGTGCCGGTATCCTCAGAAGGCTCTGTGTGAAGAAGACCAGTCTCTGGACCTTTGCTGTTTCCATGGCTCCCCTCTCTTCATCAGCAAGCCACCACAGTCGTAAACTTTGGGATGGTGGAAGCCGCGATCCTTGCCTCATGGGAGGCCAACAGCTGCCCAGATCGAGTGAACACTGTCTCTTGAGGAAGCAGTTTGGCCACTTTGAGCTGGTCACAGATTCCATCGAGCTGACTCTCATGGACAACATAGAGGCCCCCTGCTATCACAGAGACATGCAGATAGaggtggagCGTCTGAAACACACCGTGAGACTGCTGAAACAACGTACCCTGAGGCCACTGcaggagAGCAGGAGTCTGGTTCTGCCCAGAGAGAACTTCTCCCACCTCAACAGActggaggagaagaaagaggagacgcaggaggagaagaaagagacgcaggaagagaaaaaggagGATAGGAAGGAGGAGACGCAGCAGAAAGAGAGTCCAGCTCCTGTTCAGATGAACCTCCTGACGTCAGTGTTTAAACTGAGGAGAGACCTGCACCGAGCCgaggagcagagagacaggAGcgtggaggagaaggaggagttGCAGCTGCTGTGTGCTCAGCTGAAGGGAGACGCCCGGATGTACCGCCAACGAAACAAACAAACCCTCCGACAGCTGGAGGAGGTGATccgagagagagacaagGCTCTGGCGTCGCGGAcggagcagcaggaggaggcgCGGCTGCTCCTGCAGGAGAAGGACCAGTACCGGGAGACGGTCCGACAGCTGACAGAGCGATCTGATaggctggagctgctgctgctcagctCGCAGGGGGAGGAGCTACAGCTGAGGACACGCCTCCGCAGACTCTCCTGCAACACACACCACtgtgagaggagcagtgaggaagaggaggagccaGCAGAGAGTGCTGCTAAAGGTGAGAGTCAGAGAGATGAGTTACACACTCAGCACATTCACACTGATGCTGATCAATGGGCTTCTTCAGGAAGGAAATGGGACATATCAGGTGACCTGTATCAGCTGACCTGTGTACCATGTGACCTGTGTACCATGTGGTTCAGCGGAGAGCGATCGGGGGATAACGAGGAGGTGGCAGCGCTGCAGGACCAGGACTCTCCTGGAGGAGGCCCCACAAAGTCTGAACACAGGCCCAGCACTGATGCATCATGGgatgAGAAGACAGGCAGCTGTCTGCCCTTCAGGAGTCGACCTAACTTCTTCTACCGCAGGAAGCGCGCCCTCAGATCAAAGTTTACCTGCAGGGACTTCAACTCCAGTAACCATGACGACAGCAGTGGCAGTGACATCACCGACGACTCTGACTGAATACGCGCTGCCTTCAAAATAAGAGTCTCAAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92785 lncRNA downstream 37753 43037547 ~ 43038477 (-) True G69258
TU92780 lncRNA downstream 53392 43021132 ~ 43022838 (-) True G69254
TU92740 lncRNA downstream 62165 42971126 ~ 43014065 (-) True G69229
XR_005639465.1 lncRNA downstream 104605 42970466 ~ 42971625 (-) True LOC120560258
TU92686 lncRNA downstream 256896 42780818 ~ 42819334 (-) True G69184
TU92772 lncRNA upstream 4795 43103960 ~ 43104752 (-) True G69246
TU92771 lncRNA upstream 4831 43103996 ~ 43104519 (-) False G69246
TU92802 lncRNA upstream 52697 43151862 ~ 43152875 (-) False G69271
TU92804 lncRNA upstream 52697 43151862 ~ 43153110 (-) False G69271
TU92805 lncRNA upstream 52697 43151862 ~ 43152875 (-) False G69271
XM_039802527.1 mRNA downstream 51180 43002497 ~ 43025050 (-) True chek2
XM_039802439.1 mRNA downstream 117957 42873897 ~ 42958273 (-) False LOC120560194
XM_039802438.1 mRNA downstream 117957 42873897 ~ 42958273 (-) True LOC120560194
XM_039804065.1 mRNA downstream 221888 42822405 ~ 42854342 (-) True LOC120561115
XM_039802518.1 mRNA downstream 253585 42819874 ~ 42822645 (-) True LOC120560237
XM_039802523.1 mRNA upstream 6177 43105342 ~ 43141553 (-) True snapc4
XM_039802524.1 mRNA upstream 44223 43143388 ~ 43178989 (-) True pomt1
XM_039804069.1 mRNA upstream 124312 43223477 ~ 43251312 (-) True LOC120561119
XM_039804070.1 mRNA upstream 202454 43301619 ~ 43304446 (-) True LOC120561120
XM_039804071.1 mRNA upstream 209183 43308348 ~ 43310847 (-) True LOC120561121
TU92737 other downstream 57979 43004586 ~ 43018251 (-) False chek2
TU92739 other downstream 62165 42970084 ~ 43014065 (-) False G69229
TU92741 other downstream 62165 42970084 ~ 43014065 (-) False G69229
TU92743 other downstream 72883 43002255 ~ 43003347 (-) False chek2
TU92678 other downstream 266608 42772991 ~ 42809622 (-) False LOC120561114
TU92756 other upstream 74000 43173165 ~ 43178971 (-) False pomt1
TU92775 other upstream 111854 43211019 ~ 43218894 (-) True G69249
TU92812 other upstream 151593 43250758 ~ 43251295 (-) False LOC120561119
TU92928 other upstream 272602 43371767 ~ 43380599 (-) True G69356
TU92966 other upstream 442078 43541243 ~ 43546558 (-) False phf19

Expression Profile