RNA id: XM_039804069.1


Basic Information

Item Value
RNA id XM_039804069.1
length 3540
RNA type mRNA
GC content 0.54
exon number 23
gene id LOC120561119
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 43223477 ~ 43251312 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgatgctccCTGCAGCGgcggaggagaggaagaggagagaagaagaactGAAGGTCATTTGAGAGAATCTGAGATTTCGGATCGATGATCGACTCACTGATCGCTGCGCGTGCACAGCGTAATGACATGACACAAGAGCACGGAGCGACAGACGGATTAGCTGCTGCATCCATCCACCTGCCTGTCTCCCTGcctgctgcctgtctgtctgactgaatCTCCACCAGCAGCATCCAGATTCCAcacctgtctttctctctctcgctctctctctctctctctgcctgtctcgctgtctctctatctctccgtctgtctctgtctgtctgtccacacctgtctctctccacacctGTCTCCCCGCCGTGTGCCGGCCGTGTCTCCGCCATGGGGAACCGGGGGATGGAGGACCTGATCCCGCTGGTGAACCAGCTCCAGGACGCCTTCGCGTCCATCGGCCAGAACTCGAGCCTCGACCTGCCGCAGATCGCGGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCCGTTCTGGAGAACTTCGTGGGGAAGTTAGTAGTTctactgcagccagccagcaGGGGGGGTCCAGATGTCTGGGCTCCCCTGAAGTACGCAGAGTTCCTCCACTGCAAAGGGAAGAAGTTCATCGACTTCGATGAAGTTCGTCTGGAGATCGAAGCTGAAACTGATCGGATCACCGGACAGAACAAAGGAATCAGTCCAGTCCCCATAAACCTACGAGTTTACTCCCCCcacgtgtTAAACCTGACTCTGGTGGATCTTCCCGGCATGACGAAGGTCGCGGTGGGCGACCAGCCGGTAGACATCGAGCaccagatcaaagagatgctcATGCAGTTCGTCACCAAGGACAACTGTCTCGTGTTGGCTGTTTCCCCCGCCAACTCTGACCTCGCCAACTCTGACGCTCTGAAGATCGCAAAGGAGGTCGACCCGCAAGGTCTGAGGACCATCGGTGTGATCACCAAGCTGGATCTGATGGATGAAGGAACCGACGCCAGAGACATTTTGGAGAACAAACTGCTTCCACTACGCAGAGGTTACGTCGGGGTGGTGAACCGCAGTCAGAAGGACATCGACGGGAGGAAAGACATCACAGCAGCCTTGCAGGCTGAGAGGAAGTTCTTCCTGTCGCACCCGTCATACCGACACCTGGCAGAACGCATGGGCACTGCCTACCTGCAGAAGATCCTCAAccagCAACTGACCAACCACATCCGGGACACGTTGCCGGGGTTACGCAGCAAACTGCAGAGCCAGCTGCTGTCCATCGAGAAGGAGGTGGAGGAATACAAGAACTTCAGACCGGATGACCCGAGCCGAAAGACCAAGGCCCTGCTGCAgatgGTGCAGCAGTTTGCGGTGGACTTTGAGAAGCGGATTGAAGGATCCGGAGATCAGGTGGACACCTATGAGCTGTCAGGAGGAGCCAAGATCAACCGAATTTTCCACGAACGCTTCCCCTTCGACCTGGtcaagctggaGAGTGATGAGAAGACTCTCCGTAAAGAGATCAGCTACGCCATCAAGAACATCCACGGAATCAGGACGGGTCTGTTCACACCTGACATGGCGTTTGAGACGATCGTGAAGCGTCTGATCGCTCAGATCAAAGAGCCGTGTCAAAAATGTGTCGACATGGTGATCAACGAGCTGGTCAACACCGTGAGGCAGTGCACACAGAAGCTGGCTCAGTATCCGATGCTCcgagaggagatggagagaatCGTCACCCAGCAcataagagacagagagagtcgCACCAAAGAacagGTGTTTTTGCTGATTGACATTGAGTTGGCCTACATGAACACAAACCATGAAGACTTCATCGGCTTTGCAAAtgctCAGCAGAAGAGCTCTCagatgaacaagaagaaagCAGCAGGAAACCAGGACGAGATCATGgtgatCCGTAAAGGTTGGCTGACCATCAACAACATCAGCATCATGAAGGGCGGAGCTAAAGAGTACTGGTTCGTCCTGACGGCAGAGACACTGTCTTGGTACAAAGATGAcgagGAGAAGGACAAGAAGTACATGCTGCCTGTAGACAACCTGAAACTCAAAGACATCGAGAAGAGCTTCATGTCCAGCAAACACATCTTCGCCCTGTTCCACAATGAAcacagGAACGTGTACAAAGACTCCCGTCAGCTGGAGCTGGCCAGTGAGTCTCAGGAGGAGGTGGACAGCTGGAAGGCTTCTTTCCTACGCGCCGGAGTGTACCCTGAACGCACCGTGGATAAAGAGAAGGTGGAGGCGGAGGAAGCGAGCGGCGACGGGCAGATCCACAGTCTGGACCCTCAGCTGGAGAGACAGGTGGAGATCGTTAGGAACCTGGTGGACTCGTACCTGTCCATCATCCACCGCACGGTCCGGGACCTGATCCCCAAGACCATCATGCACCTGATGGTCAACAAcACGAAGGAGTTCATCCACTCTGACCTGCTGGCTAATCTTTACTCCTGCGGAGACCAGAACAGCCTGATGGAGGAGTCCCAGGAACAGGCCCAGCACCGTGATGAGATGTTGAGGATGTACCACGCCCTGCGTGAGGGTCTGAGCCTCATTGGTGACATCAGCACCTCCACCATCAGCACGCCCATGCCCCCCCCCGTCGACGACTCCTGGCTGCAGGTCACAGGGATGCCATCGGGACGCAGGTCTCCCATGTCCAGTCCGACCCCCCAGCGTCGGGCCCCTCCTGGACCTCCCCGTCCCGGTGGACGAGCAGCCCCCGGACCTCCATCTCGTCCCGCGGTGTCACCAGATCCTGGAGCACCCAACGTGCCCTCCAGACCCAACAGAGCCCCCCCACCGGGAGTccccagTCGTCCCAGTAAAGGTAGCCCCGCCCACGGAGAGAGCCCCCAGTCTTCTGTGGAGTATTAACCTTTGACCCCGGCgggtttctgtttctgtcaaCTTCACTATAATCAGCTCATCATGACTGTACAGCAAACACTCAGCAATATTACATGTTTGGtccagctgtctgtctgctctctggAGATTGAGACAGGTccgctgtctgtctgctctctggAGAGTGAGACaggtctgctgtctgtctgctctcacGAGAGTGAGACATGTCCTTCTCTCAGGAGAGTGAGACAGGTCCTGCTCTGAGGAGAGTGAGacatgtctttctgtctgtataAAGTTCTGAGGATCTCCAGACTGATCTGTCTTTTATTCTTATTCATGCTGAAATGTTGCATTGTTGAACTTTTCTTTACAGTGTAAAGTTTACATATAATTTTAACTGATGTATTTATTGatctatttattgatttatttacaaTGTGTGGTTCTTATTGAAATGTGATGTAATATGATGTTATCTGTCAACTTGTTAAACATGGACCCTGTTTTCTCATGTTCTGGTGTCtgactggtccagtattaatcagttagagtcactaaaagttctgttgttgctgctgacagactcagattattattctaagtgtctgacaacattatgggatggatccctacagag

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K01528 DNM1_3; dynamin 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92777 lncRNA downstream 29085 43166121 ~ 43194392 (-) True G69251
TU92804 lncRNA downstream 70367 43151862 ~ 43153110 (-) False G69271
TU92806 lncRNA downstream 70367 43151862 ~ 43153110 (-) True G69271
TU92802 lncRNA downstream 70602 43151862 ~ 43152875 (-) False G69271
TU92805 lncRNA downstream 70602 43151862 ~ 43152875 (-) False G69271
TU92911 lncRNA upstream 15505 43266817 ~ 43450492 (-) True G69340
TU92913 lncRNA upstream 23167 43274479 ~ 43275772 (-) True G69342
TU92910 lncRNA upstream 134846 43386158 ~ 43396705 (-) False G69339
TU92909 lncRNA upstream 145008 43396320 ~ 43396705 (-) True G69339
TU92912 lncRNA upstream 148749 43400061 ~ 43409122 (-) True G69341
XM_039802524.1 mRNA downstream 44488 43143388 ~ 43178989 (-) True pomt1
XM_039802523.1 mRNA downstream 81924 43105342 ~ 43141553 (-) True snapc4
XM_039804068.1 mRNA downstream 124312 43076230 ~ 43099165 (-) True card9
XM_039802527.1 mRNA downstream 198427 43002497 ~ 43025050 (-) True chek2
XM_039802439.1 mRNA downstream 265204 42873897 ~ 42958273 (-) False LOC120560194
XM_039804070.1 mRNA upstream 50307 43301619 ~ 43304446 (-) True LOC120561120
XM_039804071.1 mRNA upstream 57036 43308348 ~ 43310847 (-) True LOC120561121
XM_039802458.1 mRNA upstream 229649 43480961 ~ 43528118 (-) True LOC120560199
XM_039802460.1 mRNA upstream 229649 43480961 ~ 43527562 (-) False LOC120560199
XM_039802459.1 mRNA upstream 229649 43480961 ~ 43527562 (-) False LOC120560199
TU92775 other downstream 4583 43211019 ~ 43218894 (-) True G69249
TU92756 other downstream 44506 43173165 ~ 43178971 (-) False pomt1
TU92794 other downstream 134650 43077852 ~ 43088827 (-) False card9
TU92737 other downstream 205226 43004586 ~ 43018251 (-) False chek2
TU92739 other downstream 209412 42970084 ~ 43014065 (-) False G69229
TU92928 other upstream 120455 43371767 ~ 43380599 (-) True G69356
TU92966 other upstream 289931 43541243 ~ 43546558 (-) False phf19
TU93018 other upstream 429164 43680476 ~ 43709236 (-) False LOC120560198

Expression Profile