RNA id: XM_039802341.1


Basic Information

Item Value
RNA id XM_039802341.1
length 2707
RNA type mRNA
GC content 0.45
exon number 3
gene id gal3st1a
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18622821 ~ 18628475 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGACTCCAGTGTCTCCACTCAATAGCCCTCTGTATGTAGACACAGAATGGGAACTATACAGCCCCTCTCGTCTCCTCCCTTTTTGTCTTTCTCCCTGCCCTCTTTCTTCACATTGAATGACAAGTGCATGTCCCCTGACACACTTCCTGACGTCACAGATGGATAGATGAGCCTCCCTGCAGAGCTTTATTCAGCGAGGTTCGTTTTTAGAATTGAAAGTTGAGGGGGAGGCGGCAGGTGGCCCAAGGCATCAGGTGTGCATGTAGAGAGGCAGCAACCAGATGAATGAGCTCCGTAGTGCTGGGCATGCGACAAGGGAAGCACGGGACTGTGCTGCAGTATGTGCATGTCGAGATCTGACATAAGAACGGCTTGGGAAAAGAAGAGGACAATGCAGTTGGACAAGAaacacttttagtttttctttggaTTTATGTATGAGGGTAATCCTTGATTCTGCTGGACCATGGCTGGCAAGCAAGGGAGGCAGTGGAGGTCCATGTGCAAAGGCCTGGTCCTGGGTACCCTCCTGACCAGCTGCATGATCCTGCTTTACTGCCTCTCCACTCCCCAGATCCACTACACTCTGCCTGAAGTTCCAGTGCCTTATTCCTGTGCCCATCGTCCATCCCAGCTCCATCCCAAACCAACCACAAACAGCTCACAACAAACCCCGGGTCAGACCTGCACTCCTAAGGTGGATATCATGTTCATGAAGACCCACAAAACAGCCAGCAGCACCTTCCTAAACGTCCTTTTTCGCTTTGGGGAGAAGCACCGGCTCAAATTTGCCTTCCCTGACAGCAGAAATGACTTCTTCTATCCATCTCTTTTCCAACGCTCCCAGGTTAAAGACTACAGACCTGGGATGTGCTTCAATATTATCTGTAATCACATGCGCCTTAATGCACCTGAGGTGGCCAAGTTGCTACCTATGGACACTTCCTACATCACTATTCTGCGAGACCCTGCAGAGCTTTTTGAGTCATCCTTCCACTATTTTGGCCAGCTGGTGCCTTTTACCTGGAAGATACCAGGTGATGATAAGCTGACTGAGTTTCTACGTGACCCCAATTACTACTTTGATCCACAGGGCTTCAACTCTTTCTACCTCAAGAATCTGCTGTTCTTCGACTTTGGACAGGACAACACTCTGGAGCTGGATGATCCGCAGGTAGAAGAGGTAATCAGATTCATTACTGAGCGTTTTCAGCTGGTCATGTTGGTGGAATACTTTGAGGAATCACTCATCCTTCTCAAGGATGCCCTCTGCTGGGAGCTGGACGACGTGCTCTTCTTCAAGCTTAACGCCCGCAAGGGATCCACTGTGTCTAAACTCACCCCTGAGCTGAGGGCCCGGGCTCTTGAGTGGAATGCTATTGACTGGAAGCTATACCAGCATTTCAACCACACCTTTTGGAAAAGAGTAGATGCATATGGACGGCGGCGCATGGCTGAGGATGTGGCAGAACTCAAGAGAAGGAACACGGAGATGGCATCCATCTGCATTGAGGGTGGTCGTGCTGTAGAAGCTGGCAGCATCCAAGAGACTGCCATGCAGCCCTGGCAGCCCATCGGACAGAAATCCATCATGGGCTATAACCTGAAGAAGAATGTGGACAAGGCACATCGAAAGTTGTGTCGAAAGATGTTGATGCCAGAGCTTCAGTACTTAACAGAGCTTGGGGTTAACCTGTGGATCACCAAGTTGTGGGGCCATGTCCGAGATATCCTTAACTGGTGACTAGACATGTGAGCAAGGGGGCCAACTCAACTCTGACAGAATGTATTGAAACAGACTGTGTGGCTAATAGAGTGAAATGTTTAAGTTTTCTGTCACATTTCAATCCTATGAcctgtcttgttttgtttaaatgtgtCAACATTGACTTGTTTGCTTTTCATATGATTGTGTGCTGTAATGTATCTGATGGATGTTTGAGAAAAACACTTCACAATCTACAAATACTGAACCAGTTTCCTAAACGCAGATGAGGCCTAGTATTGTTCTCTATGTTTGTGAGTCAattatacaaaatgtaaatgttcttACTCTCAGATGTGAGCTTGTTTTAATGGAGCAGATGAGGGAACAATGACGTCTGGGACTACTTTGATAAGCTTTTTAATGgaataaagacaaaaatgttGCCATCCCTGCCAACTTTAAAGGTTCTTTGAAGGCACAGAAAGAATGGTACTTTGCTTTGAGCTTAATATTGTCTTTGATGTCCATCCCTCAGAGTTGAAACATCTAAGTTCTAAGAGACTGAAAGACCACTAAGGGCTGAAGTACAGATGTGAAAATAGTGAATGTAAGTACTACATCCTACTTTACTGTCTGTGGAGGACAAAAACATCCATCGTTTTTAAAGTAAGTGAACAAATACAGACGTTTCTAATGGCAGACGTTTTCACATTCACAAGGAAAGCACAGGGGCAACAAATGATCATTCTGTTCCTACAGCTAGCCATCGTTTTTgttattaattacacctgtgcagtaacatgtcaaaatgtctgtcaTGAAATAGGTCTGATCAATAATATTTAAAGGAATCAATACATTAGAAGTACAGCACTATgcattcaaaaagaaaaataatttccTTATTCATTTACTTTTCTTATCCATTTTTATAGCATATAATGTGTTGTATGTTGAGCTTTCTGCCATATGATATAAAATGTTCCCTTCTTTGCAA

Function

GO: NA

KEGG:

id description
K01019 GAL3ST1; galactosylceramide sulfotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83851 lncRNA downstream 82806 18539126 ~ 18540015 (-) True G62625
TU83857 lncRNA downstream 87540 18534933 ~ 18535281 (-) True G62630
TU83856 lncRNA downstream 100946 18521564 ~ 18521875 (-) True G62629
TU83803 lncRNA downstream 224875 18394836 ~ 18397946 (-) True G62586
TU83785 lncRNA downstream 265068 18355242 ~ 18357753 (-) True G62571
TU83955 lncRNA upstream 106433 18734908 ~ 18737388 (-) True mmab
TU83997 lncRNA upstream 118718 18747193 ~ 18748609 (-) True G62733
TU84039 lncRNA upstream 208499 18836974 ~ 18845777 (-) True G62771
TU84040 lncRNA upstream 276844 18905319 ~ 18906567 (-) True G62772
TU84129 lncRNA upstream 328782 18957257 ~ 18961477 (-) True G62817
XM_039802338.1 mRNA downstream 1667 18613470 ~ 18621154 (-) False lztr1
XM_039802339.1 mRNA downstream 1667 18614457 ~ 18621154 (-) False lztr1
XM_039802337.1 mRNA downstream 1668 18613470 ~ 18621153 (-) True lztr1
XM_039802336.1 mRNA downstream 11127 18610705 ~ 18611694 (-) True cldn26
XM_039802324.1 mRNA downstream 12879 18587819 ~ 18609942 (-) False LOC120560137
XM_039802343.1 mRNA upstream 1492 18629967 ~ 18637041 (-) True pes
XM_039802342.1 mRNA upstream 14396 18642871 ~ 18659829 (-) True pole
XM_039802887.1 mRNA upstream 56986 18685461 ~ 18692897 (-) True foxn4
XM_039802307.1 mRNA upstream 86946 18715421 ~ 18720543 (-) True kctd10
XM_039802314.1 mRNA upstream 106947 18735422 ~ 18737406 (-) False mmab
TU83852 other downstream 110560 18510155 ~ 18512261 (-) True G62626
TU83834 other downstream 130431 18489872 ~ 18492390 (-) False zgc:158398
TU83818 other downstream 179996 18439909 ~ 18442825 (-) False iqcd
TU83799 other downstream 236552 18383005 ~ 18386269 (-) True G62582
TU83796 other downstream 242319 18377602 ~ 18380502 (-) True G62580
unassigned_transcript_263 other upstream 324425 18952900 ~ 18952972 (-) True trnak-uuu_12
unassigned_transcript_264 other upstream 325015 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84214 other upstream 472766 19101241 ~ 19102450 (-) False ficd
TU84258 other upstream 551030 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84427 other upstream 920986 19549461 ~ 19554894 (-) False LOC120560442

Expression Profile