RNA id: XM_039802434.1


Basic Information

Item Value
RNA id XM_039802434.1
length 8118
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120560191
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42262425 ~ 42271211 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTACGTATCTTTTGAGAAGCATCCAAAGGTTTCCTCTGTCTACATTCTTGATGACAACCAAAGACCAGTACTGATCCGAGGTGACTCCATGCCTCTGACAGAGGACAGCCGGCTGGTGCTGGTCGGCCACGGCAGGAAAGACAACTCAGGAGAAATGAGACTGGGAGGGTACGAAGTGCAAGAAGTCTCCAAAATCATTCAACAAACCTCCAGGGATTccaataaaattaaaacaataagtGTGGTGGCCTGTGACGTCGGATCAGATAAAGCATTCATTGAGACGCTGCTGAAGGATCTCCATGAGACCACCGGCATCGAGACAGAGCTGCACATCAGGGACGCTGTGCTCCAGGTcagacacacaggagagaaaatcACCCTGGAGATCACTAAGGATGGAGAGCAATGGCAACATAAAGATGACAGCAAGAAAGTGGTCGCAACCCTTGACAGGAACGGAGATGTAATTATTAGAAATGAGGCCGGCAGTAAAGGAAAGGAAATCTTTACCGCTGAAAGAAACTTTCTAGGTCCTGAAAAACGTTTCCTGGTCTACAGAGACAGCTGGCCAGATGAGCCAAAAAGATTTATTAACCAGAATGTTTATGATAAGTTGAATGCTAATGAACGTAATGCTTGTAATCAACTTGAAGCTCTGTCCCGGGGATTGTTTCATGATGAAAACATACCCCGTCCAGAAAAAATGAAGATTGAAAAATTTGATCTAAAAGCCTATTATttattagaaagaaaaaaatggttcaatgaaaaaaagaaacgttATGAGCTTACAGGGGAAGTAGAGAAGATGAAtaatgaacaaaaaaataaaattctttCCAACTGTTATGAGATTAAATCAGGAGAAGATATCAGGAATGTAATCCGTCACTATGCAAAGACCGGAGAAAAAAAGGTCACATACCTGAAGGTCAATGACTGGATATTAGAGGTTGATCCTATAAAGCTGTATGTCGCTCCAATCGGAAAAAAGCTTGACaacaatgaaagaaaaaaagaagaaaacattaaGAAATGTATTGAAGATCAGATAGgaaaagaaagttactttaaaaTACGAAAAggaattaaaacagaaatgggCCAAAATGACCCTAAAGAAGGATACGCTGAATATATGGAAGGTATTTTTCGTGGAGAGCCCACAAAAGCTCGCCTTCCGCTCCCTGCTGAGGCCTGGTTAACCACATATTTCACTGCATCAGTTATATCTGAATCTGCTAGAAACTTCCGGACATTTGCTCTGACTCTCATGGCCCTGGATATGGTCCAAAGCACAGACAACAATATCAAAGAGAAAGGACTGAACTTTCTTTGGGAAGAACATTCAATGGCAAGACAATATTCTTGGATTGACCCAAGCAGGCGTGGATTTAGTGGCTCAACCGACAATGAACATTCCAGCAAATTAAAAAATCACCCGAAGCCTTCGACTACTGACGGATTAGAGAATGATCTTAAGAAGCTTATAACAAGTGCAGTCCAACTGTATAGTAGGTGGAGTCAAAATGGGGAAAGAAATCCGTCTCAAATATTCAAATTCGCAGAGAAGTACAGGATAACTGGACGTGATGAAGTTCATAATTACGAAATGTTCATAAATACAGTAGGTAAGAGCGGCTCTACTGCGTCCGGCCGATTAGGAGGCTACAATGACGGCCACATAACATCCCATGACTTAAAATCTGCCTCTGAGTTGGAAAAGTCCTTCAAACTTGAATCGTATTACTCCAGGCTGAGCGTATTAACCGCTGAACAAGTCCACAGTCAGTTAAAGGCTAAATATGGTGAAAGTCTGGCAGGGTTGCAGGTCCAGGAGGGCAGCGCCAGAATGGAGAATGGAGAGTTTGTGTGTCATCTGTTAGACGGTGCTGACGGTAAACCTGCTGAGTTTAAGGCTAAGTTATCTCCTGAGAGTCAACGCTACACTAAAGCAATGTCAGAGAGCATTGAAACAGCAGTTCATGACATGGAAAATCACGGTTCAATCTCCTCCCATCAAGGCAGCAAGTACGTAGAGCACGCTGGGCATGCTGTTGGGACGCTGGGCCTCATGCTGGGGATGAAAGGAGCTGTTCGTGCTTTTGAACAGGGTGACATTAAAGATGGCGTGGTGGGGTCTCTGCAAACGGCTCATGGAGTGACAGCTATGACAACGTCTGTTATTGCAAAACAAGCTCTGTCCTCAGAGGCCAGAATGGCCAAAGCTGTAACATCGGTCATGAAAAGCCCTGCAATGAAGGGTTTTACGTCAGTTATACCAATAGTGGGAATTGGATTCGGGATAAACAATCTTGCACAAGATTTTAAGAGAGGTGACGCGCTGGGATACATCGATGCTTCCTTAGATGGTATTATGGTTGGTTTAGATGTTATTGAACTTTTTGTGCCTGAACTGGCCCCGTTTATAGCGCCTACAAACCTGGCTTTATGCATAGTCCGGATGGTCATTGATGACATTTATATGGGCGTACAGAATGAGCTAAACAACCTCCCGAAAGATGCTGGAGTTCTGGAGAAACTATGGGCTGTTAATTTTGGCATTCTGAAGGGGATTTGGCATTTTGGAATTAGTCTGGCAAGTTTCTTTTACGATTGGCGTTACAATGAAATTGAGCAGGGACACAGACTTGTTGATCAGATATCAGACTATCACAAATATTACAAAGTTACAAAGCAACAGGATGGAACGAGTGCCGTTGATTTTAGTGGTGGTGACTCTTCTTGGAACGGAGGAGGAGTTCACTTCTGCCTCGCCGACCAGGGTCCGTCTGAACTCTGCATGGACTATTTTGTGTCTAGTGATGAGAGTTTTGGGAAAAGGTGTTGGCAGATTGATACACAGGGAAGCAAAGATATTATTCTTGGCCTGGGAGAGTCACATCAGTTAGAGTACACGACACTACAGAAGAAAATACTCTGGTTCATACCAGCCGGCTCTGTGACGGTGGTTTCAGGTTATAAAGATGTACCAGAGTCAAGGTATGGGGAATATATAGGAAATAGAGATTCTAATCGTTTTCTTGCAATTCAGAAAGCAGAGGATGAACATGTGATTGAAGTCATGTTAAGTTACTATTACAAGCTTTATGGTGAACCAGGTGATGACATATTCTTCCTCGGGCCACAGAGAAGTTACGTTGAAGGATGCGGAGGAAAAGACACGTACATTATTCCtaaaaatggaggaaaaacaaCCATTAACAACTACGATCCTTCCAAAGCACTAGACACTCTTCATTTCAGTGTTGATTACAGTCACATTTCTGTGTCTAAATCTGGAAATGATGTTGTGTTAATGTATGAGGGAAGTCACACTGTGACCATAGAAGGATGGTTTTTAGGGGAACCGTATCGTCACATGAACATGATGTCTGGAGACGGAGTCTTGTTTGAGATTTCCTCTGTCGTGGTTTCTTCTGTTCAGCTGGTGGCTGTAGGGGTTAACAAGATGTTCAGCTCTAGTGGTGAACATGTGGATGCATCCCAGCCACTTTTAAGCAAAGTTACAAACATCTTTGGGTCTCAGTATAACGATACACTTGTTGGAAATGGAGAGAATAATATCatagatggaggaggaggtcatGATCGGTTAATGGGCGGTAAAGGAGAAGACATGTACATAGTGAAAGTCAGAAAACAGTCATCGGTGTATATTGAAAATTACTCCAAAGACACTAAAACAGATCTGGCCATAATAGAAGCAAACATTCACACCTTTACAGTCAGAGTAGTGTTTGACCATGTTTTTCTCAACGCTTCCCATGACAACACGCCCGTCAGGGTGACTTTAGGGAATTGGTTTAGATCAGCAGCAGACAGACATTTGCTTGTTGTCACAAAAGATTTGATCACTTTCACAATCTCAGATAACAAGGCCGACTGCCTGGACAGGAGAGATCTGTTCACCAAGTGTATTAAAAGTAGCAGAATCGACTACAGCAGCTCACCATCTCCTCTGCTGGTGGACCTTCAGGAGGACGAGTCTTTTAGCAGCGTGACGGAGGTTCGTGGGTCAAAGTTCAACGATGCCATCAGAGGGAACAAAGAGCACAATGTTATTGTCCCAGGAGAAGGAGATGATTTCATCCAgggtagaggaggagaggactGGTACGTTATCACACCGGGCCAAGGAGTCAAAACCATCAACAACCAATCTCCAGATCTAGCCTTGGATATTCTCTTTCTGAAAGAACAATACGAGAACATAAAGTGTTCTTGTGAAGGACAGAGCATCATCATTTTGGTACACGGTAGAAAAGATGTTATTTTACAGAACTGGTTTGATTCAAAGTTTCATCAGCACCTGCAGATTAAAACCAGTGATGGAATAACAGCTGGACTGATGACCAACCGCAGCAGCTGTGATGACTCGTTAATGTTCCCTGTAACTGTCGATTATAGAAACCAGAAACCTGAACCACTTAATTCGCTCCAAACACATCTCCAGAAACGCTTAATTTATGTAGAAGATGAGTCTGAAAATGAGTGTTTCACATATAGTAGAAACAATTCACAGATGAAGCAAGTCTTCTGCGGCCTTCAAGGCAAAGTGATGCTGATGAATAATCATGATTCAGTTAAAGAAATGTACGGTTCCTCAGGTTTCGACGTAATGGTTGGAAACAGCAATGATAATCTCCTTGATCCATACACCGGAGGTGCCTTCATATTTGGAGGTGAAGGAAAAGACACTTACATAATCAAACAAGGATATGGAAACTCAATGATCGATAACTTTGCAGAAGATCAGAGTATTGATACTGTGTTGGTTGACATGGATTATCTTCATGGCAGTCAAGTCACACTGTACTCATCAACAGAAGATTTGGAAGTGACGATCACATCAAAAGGGGAACAATTCAAATTCACTCTGGTCAACTACGCCAAAAGTTCCAAACATCAGCACTTAGAATTTCAGAGCTCTGACGGAGtgaattttaaattgaaataccTAAACTCAACCGGTGATGTCCCTGTCTTTCACACTGAAGCTTTCAAAGTGACTCGGAAACAGCTGCAGGTTGACTGCCGCCTGGACCTCAACTCTCAGAGGAATCTGTCAAAGGTCCACACGGTGCAAGGCTGTCCCTCCCAGTCCAATGACATACTAGGTAACGATCAAGacaacgctctgattggtgggTGGAAGGATGACGCCTTGGAAGGAGGCGCCGGAGATGACACGCTGATCGGAGGGAACGGAGACGACCTCCTGATTGGTGGCTTGGGAGACGACACTCTTTATGGCGAGGACGGAAATGACACTATGATGGGAGACTCTGGTCGGGACGTCTTCCTTCCCGGACCAGGGGCCGATCTGGTGGACGGGGGTCCTGGCAGAGACACGGTTGTGTACCGGGGCGATCCTGACACAGGTAAAGGAGTTTATGTCAACCTGCTGACGGGACAAGGCCGCTACGCCGATGCTGAGGGTGACGTGTTGAAGGATGTGGAGATAGTCATCGGCACCGTCTACTCTGATATCTTGGTGTCCGGTTACGAAAGTTCTCTCCTCAAAGGCTCAGATGGCAATGACATCTTGGTATCCACCGGTGGCGATTACCTGGTCGGAGGTGATGGAAATGACATTTACATGTTGGCTTTCAACAACGGTTCAGTCACGATTGATAACTGTGCCAAAGACAACGCTACAGACGTCTTGTACATGAGCTCACAGTCAACGCTGCCATTTGACTGCCAACTTTTGTCTGACAGAGTTCTCCTGACTTCATTTGGACTTAACCAAACTACTATTAAAATTACACTGCAGGGCTGGACCAGTGATGAGAACGAATGTGGTCATTTGAAGTTGGTTTTTAGAGATCAGGAGGTGTCGGTGGACTGGCTGCTGCAAGAGTGTCAGTTAAGACAGAAGAAATCAGTTTGGTATCTAGTCATGAGTTGGATTATCTGGATCATTCATGTACTCTTAAGGCAGTTTTATGCTTTTGCGTCGAATTGACAGCGTatcccccgcagacccctctgcgtcgccGCAAACACCTCTCTGAGCCCTCCGCCGTAGCTCAACGTGCACCTCCAAACATTTGTAACTTCATGCCGAGGCGACGCAGACCGcgaggactgtgattggtcagctggtcctCTGTGTTGATAGTcggtgtttcaagcagcctactgtggggagtaacaatatgctagttcactgacataaGCTTTGCAAAATAAAttcagacatacagtattttggttacaatgacggggtttgtaaagtgtctatacGTCAGTAAAGTTTCGAAATTAAAATTAGAACTCCGAAAGGGTTACAACACCGTAGGAGCGACAGCGTAGCTACGGCGTGGTGTTGATGCAGAagaataaaacagcctttaggctgagttttcattttaccaacacacatacacatcagtTTTAAGGGCAAAACAGTAAAAGACACAGAAACAAATGTTGATGCAGAATCAGTTTCCATGGTGGCTGATGTAATGTAGAGTTCTGTAGCGCTGCAGCTAAAATGTATCTTTAAAAATGAAAGACACAGAATCTGAATTTCAAAAATGATTTGTCATTATATCTTAACTTTGCTCGTTCAAAACTTGTCTGTTTAGATCAGactgattgcttggcctcttGCATTGCTGCTTATAGCTTTCTCAACCATTGTACCCCGAACAAAATTTACATAAGGACCCCAAAGCAAAACAACTGTGTACTACTAGGCTTGTTTGAGATGAGCTGTGCCTCGCCCCCTGCTGGGCGGTGACTAAAAGATGCGGTCAAGTCAGACAGTTTCCAGCTTTAAGActaaacactcacatcctgttaaTTATAAtgtatcagacccatatatcagcttgtttAGATActgacagagtagctgttaaAATGCTCTACAGGTGATCTTTTGCTGatgttaaaatacaacagaCTAGATTATCTGTAATCAGAATGTATCTAAACGTCACAACATGTTTTCTGCTAACAGAATAAatcttaaatcagacaaatatcaGTCAGAATCTCTCCGATtcaaaaacatggaaaagttTAAATAAAACGTCATAGCCTCTTCAATCTCATGAGGTTATTGTTGACAACATGACGTCAGAGTGATTCTGTATCAAATCGGACAGaaatctacccagcatgcactgggcgGAGATCGCCTGTGATTGATTCTGCGCAGGCCTTGCTCATCTCCAACAAACCTGATGACTTACTATCGTTAACAATTGAACACTTCAGCAGCGGTATTCATTTTCAAACAGGCTTACAGGGATGTCACGAGAACCGATACTTTGGTACCAAGTCAAAACCAAAATTGTTCAAGTCTGCCCCTAAATGTTCAAGAAGAACGCCAACGagcacacaaaaacagagagtAGCGCCTCATCTTCGTGCACAGTGCTGACTGACGGCTTGACCGCAGTCAGCCTCTGGCTTTACCGTAACGTTACCTGGACAGCAACGGCTTTCTCAACTTCACCTGGAACTCCCAAACAGAAAgtatgtctgtttctctctgacgTTGTCTTTCACACAgtgcctaacgttagctatgaTAGCTGACGTTAGCTGACTTTATAACTTTTTAACCAGCCTTGTTCTATGTGAAACaacaacggcagagagaaacaAACGTAACTAAACATGCTTGCTGTCTGGGAGTTCCAGCTGAACTCATGGAAGATGTATCCTGCAGCCCTAAATCACGCTCTCTTTCCCCTTCCACTTCAcaccaaaacagtgacagaaagtggaaacaaaacaaaaactgacgCTATAAAAGGTTGACATGACACTTTCCCAATTCCCCCAAAGGTTTTATATAAAGGAATTAGTGAATTAATGTTTAGGTATCAAGTATCGTGAACTAGATTTTTGGTATCGTGACGTCCCTACAGATTAAGTCGCTCGTGCTGATTGACTCCaggaaagtaaagtaaagtttgtttggtACATCCAGCCATCACGTAACATTGGTGGCAGCAAACTAGCAGTCAATTAGCCCCACCttcgctacacacacacacactcgcagacacacgcgcacacacatgcacacacacacagacacacgcgcacacagacacacacacacacac

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92572 lncRNA downstream 39287 42209938 ~ 42223138 (-) True G69110
TU92563 lncRNA downstream 147666 42113244 ~ 42114759 (-) True G69104
TU92562 lncRNA downstream 148533 42112792 ~ 42113892 (-) False G69104
TU92297 lncRNA downstream 171896 42090073 ~ 42090529 (-) True G68919
TU92303 lncRNA downstream 172505 42044916 ~ 42089920 (-) True G68925
TU92596 lncRNA upstream 94818 42366029 ~ 42443845 (-) True G69127
TU92599 lncRNA upstream 124870 42396081 ~ 42413217 (-) True G69129
TU92602 lncRNA upstream 154541 42425752 ~ 42495934 (-) True G69131
TU92622 lncRNA upstream 226354 42497565 ~ 42536958 (-) False G69140
TU92626 lncRNA upstream 226354 42497565 ~ 42536958 (-) False G69140
XM_039802496.1 mRNA downstream 5541 42241736 ~ 42256884 (-) True hpdb
XM_039802485.1 mRNA downstream 49723 42209201 ~ 42212702 (-) True LOC120560212
XM_039802495.1 mRNA downstream 83127 42175476 ~ 42179298 (-) True LOC120560222
XM_039804062.1 mRNA downstream 126086 42111748 ~ 42136339 (-) True LOC120561110
XM_039802504.1 mRNA downstream 155304 42098771 ~ 42107121 (-) False rnf34a
XM_039802513.1 mRNA upstream 387145 42658356 ~ 42662019 (-) True LOC120560234
XM_039802515.1 mRNA upstream 387145 42658356 ~ 42661523 (-) False LOC120560234
XM_039804064.1 mRNA upstream 392152 42663363 ~ 42809589 (-) True LOC120561114
XM_039802518.1 mRNA upstream 548663 42819874 ~ 42822645 (-) True LOC120560237
XM_039804065.1 mRNA upstream 551194 42822405 ~ 42854342 (-) True LOC120561115
TU92567 other downstream 129844 42130611 ~ 42132581 (-) True G69105
TU92299 other downstream 146164 42107630 ~ 42116261 (-) True G68921
TU92564 other downstream 148266 42112792 ~ 42114159 (-) False G69104
XR_005639437.1 other downstream 155303 42100375 ~ 42107122 (-) False rnf34a
XR_005639438.1 other downstream 155304 42098786 ~ 42107121 (-) False rnf34a
TU92624 other upstream 264056 42535267 ~ 42536075 (-) False G69140
TU92678 other upstream 501780 42772991 ~ 42809622 (-) False LOC120561114
TU92739 other upstream 698873 42970084 ~ 43014065 (-) False G69229
TU92741 other upstream 698873 42970084 ~ 43014065 (-) False G69229
TU92743 other upstream 731044 43002255 ~ 43003347 (-) False chek2

Expression Profile