RNA id: XM_039802438.1


Basic Information

Item Value
RNA id XM_039802438.1
length 4861
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120560194
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42873897 ~ 42958273 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCTTTCAGCTGGAACTAAGCAACAATGTCTTCAGTTGAGTGTTTGAGAGAGTTTGTCACCGAGCgactaactgctgctgctgaagaaatattccgagttgttgaaaaaactaTCGTCGAGTACGAGGAAGAGATCGCTCGGCAGCGCAGACTGTTGGATGGCGTTTGGAGACCAGAAATCAGGTTACACAGGATAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCGAGAGGACCCAGAGCCTCCAcagattaaagaggaacaggaggaattGTGCATCAGTcaagagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTTTATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACTCTGAACTTCAATCCTGATGATGACACTCTAAGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTATAACCTCTGTGGAATCAGAAGTAAACAGTGACCACCAGCTCCTCTCTCACAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACCGCAACAGCGTAGACAAGACTAACGTGTCAGAGATTCACCCTAAAACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCAAGAGGACCCAGAGCCTCCACCGATTAAAGAGGACCAGGAGGAACTGTGCATCAGTcaagagggagagcagcttgtaCTGAAGCAGGAGACTAATACCTTTATGTTGACTCCTACTTATGAGGACAGGGACCACAGTGAAGGTCAGGCTCTGATCTTCAATCCTGACGATGACGCTCTCATTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTCTAACCTCTGTGGAATCAGAAGCAAACAGTGACCACCAGCTCCCCTCTCACAACTATCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGACCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACAACGCAAGAGCAGAAATCTCAGCAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAATACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggtcCTCTCTGACCAGCAGCTCAACATGCCAGTTATAACCTCTGTTGTATCAGAAGCAAACAGTGACCACCAGCTCCTCGCTCCCAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGTATGGAGACTCAGGACCAACTAGAAATGCAGAGCCAGAAACAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGCAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAATACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCAACATGCCAGTTCTAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCACAACTCTCTTGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGAACCAAAAAAGGGACGACGCAAGAGAAGAAGTCACAGCAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAATACTCAAACAGAGCTCCCACAGCAACATGTTtgtaaggaggaggaggttctATCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCAAGAGGACCCAGAGTCTCCACAGATTAAAGAGGACCAGGAGGAACTGTGCACCAGtaaggagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTTTATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACTCTGAACTTCAATCCTGATGATGACACTCTAAGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTATAACCTCTGTGGAATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCCCAACTCTCATGAAACTGAAAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGAAGAAGTCACAGTAACAATGTAGTAAACACTAACGTGTCAGAGATTCACCCTAATACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCAAGAGGACCCAGAGCCTCCACAGATTAAAGAGGACCAGGAGGAACTGTGCatcagtcaggagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTTTATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACTCTGAACTTGAATCCTCATGATGACACTCTAAGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTATAACCTCTGTGGTGTCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCACAACTGTCATCAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCGGGATCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAAACGACGCAAGAGCAGAAGTCACAGCAACATCGTAGACAACACTAACGTGTCAGAGATTCACCCTAAAACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCAACATGCCAGTTATAACCTCCGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCCCAACTCCCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGATGTAGTCGTAACTTGTTGGTCCATGTGAGAagaatccacacagAACTCCCACAACAACATGGCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCAAGAGGACCCAGAGCCTCCACAGATTAAAGAGGACCAGGAGGAACTGTGcaccagtcaggagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTTTATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACTCTGAACTTCAATCCTGATGATGACACTCTAAGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTCTAACCTCTGTGGAATCAGAAGTAAACAGTGACCACCAGCTCCTCTCTCACAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGCAACAACGTAGACAAAACTAACGTGTCAGAGATTCATCCTAATACTCAAACAGGTAAAAAGTCTTTCATATGTGAGACATGTGGGAAAGACTTTAAGTATAATTCAGCATTGCAGACACAcctgagaatccacacaggtgagaagccttATTCTTGCAAATCATGTGGAAAAGATTTCAGACTTAAGGATGTTTTTAATGtccacatgagaactcacacaggagagaagccgtatGTTTGCAAGACTTGTGGGAAAAGATTCTGTGTCACTACAACATTTAAAAGGCATATGAGAATTCACACAGGTGAGAAACCATATCCTTGCAAAACATGTGGAAAAGAGTTTCGGCAAAATAGTTACCTGTTGATCCACATCAGAAGAgcccacacaggtgagaagcccTACGTTTGCAAGACCTGCAGTAAAAGATTCTGTGATCCTTCAGACTTATTAAGGCATATGAGAattcacacaggtgagaagccatATTCTTGCAAAACATGTGGAAAAGATTTCAGATTTAATGGTGCTTTTAACGtccacatgagaactcacacaaGAGAGAAGCTGTACGTTTGCAAGACCTGCGGTAAAAGATACCGTGACGACTCAGCATTACAAAGGCATATGAGAATACACACAGGCGAGAAGCCATATTCTTGTAAAACATGTGGTAAAGATTTCAGACGTAAGGATGTTTTGAACATCCAtttgagaatccacacaggtgagaagccgtaTTCTTGTAAAACATGTGAAAAAGGGTTTAGGCGTAGTAGTACCTTGTTGGTCCACATGAGAAGAGCCCACACAGGTGAGATGCTGTACATTTGCAAGACTTGCGGTAAAAGATTCTTTGACGCTTCAGGTTTAATGAAGCATATGAGAACACACAGAGGAtagaatctaatctaatcttgaTCCTTTGAATTTTGATTATAAAGTTCTAGTGGTTCATGGTCAAAACTGACAAGAACCCTCAGAAGTGAGGAGCAACATTTTTGCAGCAATTGTGGGAAAAGTGACCTGAGGATCAACATAGACAGGAGAAACCATCCAGCTGAAACTCTCGTAGAGACCTGTTGAactgaatgaaatacttttacagTAGTTACATCTCTGATACTGAAtgttaaatattttgttaaatgaaGATGAGATGTCATTTTATAGGGTAAAGTTTCCCTTTGTATGACTGGTTTATTCATATTTCTGTTTGCCTTTTTTATACCCTGCCTTTTTCTACTGACCAGATTCTGAccaaatgttttgcatttttttttaat

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0015630 microtubule cytoskeleton cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92686 lncRNA downstream 54563 42780818 ~ 42819334 (-) True G69184
XR_005639461.1 lncRNA downstream 102464 42768404 ~ 42771433 (-) True LOC120560255
XR_005639462.1 lncRNA downstream 104583 42768403 ~ 42769314 (-) False LOC120560255
TU92694 lncRNA downstream 169905 42696173 ~ 42703992 (-) True G69189
TU92668 lncRNA downstream 217975 42653635 ~ 42655922 (-) True G69175
XR_005639465.1 lncRNA upstream 12193 42970466 ~ 42971625 (-) True LOC120560258
TU92740 lncRNA upstream 12853 42971126 ~ 43014065 (-) True G69229
TU92776 lncRNA upstream 48586 43006859 ~ 43096619 (-) True G69250
TU92780 lncRNA upstream 62859 43021132 ~ 43022838 (-) True G69254
TU92785 lncRNA upstream 79274 43037547 ~ 43038477 (-) True G69258
XM_039804065.1 mRNA downstream 19555 42822405 ~ 42854342 (-) True LOC120561115
XM_039802518.1 mRNA downstream 51252 42819874 ~ 42822645 (-) True LOC120560237
XM_039804064.1 mRNA downstream 64308 42663363 ~ 42809589 (-) True LOC120561114
XM_039802513.1 mRNA downstream 211878 42658356 ~ 42662019 (-) True LOC120560234
XM_039802527.1 mRNA upstream 44224 43002497 ~ 43025050 (-) True chek2
XM_039804068.1 mRNA upstream 117957 43076230 ~ 43099165 (-) True card9
XM_039802523.1 mRNA upstream 147069 43105342 ~ 43141553 (-) True snapc4
XM_039802524.1 mRNA upstream 185115 43143388 ~ 43178989 (-) True pomt1
XM_039804069.1 mRNA upstream 265204 43223477 ~ 43251312 (-) True LOC120561119
TU92678 other downstream 64275 42772991 ~ 42809622 (-) False LOC120561114
TU92624 other downstream 337822 42535267 ~ 42536075 (-) False G69140
TU92567 other downstream 741316 42130611 ~ 42132581 (-) True G69105
TU92299 other downstream 757636 42107630 ~ 42116261 (-) True G68921
TU92739 other upstream 11811 42970084 ~ 43014065 (-) False G69229
TU92741 other upstream 11811 42970084 ~ 43014065 (-) False G69229
TU92743 other upstream 43982 43002255 ~ 43003347 (-) False chek2
TU92737 other upstream 46313 43004586 ~ 43018251 (-) False chek2
TU92794 other upstream 119579 43077852 ~ 43088827 (-) False card9

Expression Profile