RNA id: XM_039802466.1


Basic Information

Item Value
RNA id XM_039802466.1
length 1829
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC120560202
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41501112 ~ 41513459 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgttgATTCTTGTGTTGTGAGCTCCCAGTCAGTGTTGCTGTTTTACCTCTCAGACTGACTTCAGATCAGAAGATGAGTgatttggaggaagaggaggacggaGCAGAGTCTGTAGTATCTGGCTGTCAGACTGTGAAGAGTGACCGGTCCAAACATCAACCTCTGACTTTCAGTGAAgaacctggaccctcagacacaaaagagaagaggagtgaTGTTTCTGAGGTGGAGCTgtccagaaccagaaccagaaccagagctGTACAGCAGACAGCCAGTCAGAGCAGCTCTGAAAAAATGATCAATATTCTCCATGAATATAAACATAAGATCAGAATGAAGGAGACATATGAACGTGTGACTGGAGGAGCTGatcaaacaggaagtggaaccCCCATCAACAGGATGTTCACTGAGCTCTACATCACAGATGAACTGAGTGAAGAAGTTATCAGAGGCGTTCTGATGATCGGCGTTGCTGGCGTTGGAAAAACCTTCTCAGTGCAGAAGTTCTGTCTGGTAGCTACGGCGTCAATTAACACATTAATGGAACCTGTGCTCCAGGTCAGCCACACAGGAGAGGAAATCCCCCTGGAGATCACTAAGGATGGAGAGCAACGGAGACTTAAAGATGACAGCAAGAAAGTGGTCCCAACCCTCGATAGGAACGGAGATGTAATAATTAGAAATGAACCCGGCAGTAAAGGAAAGGAAATCGTTACAGCTGAAAGAAACTGTCTAGgtcccacaaaaaaaaaaagtacaaaaaacaataactGCCTTACTGAGTATTATTTAACTAAAAAGGtaaaagagggagaaaagatAAAGGCAGTGATGATAACAGatccaaaagaaaaagaagatatTCTTTCCAAGTGTTATGATGTTCAATCAAAAAATATCATAAGTGTAATCTGGCACTATAGAAATTACAGAAAAAATGAGGTCACATACCTGAGGGTCAGTGACTGGATATTAAAGATTAAGCCTGATCTGTATGTTTATCTAGTTGGTAAATGGCTTGACAACACTAAAGGAGAAACTGAAGAAAATGTTAAGCCATGTATTGAAGCTCAGATAGGAAAAGAAAGTTACAAAGACATACGGGGAGGAATTAAAAAGGAATTGGGCAATAgtgacccaaaaaaaaaatttgctcaATATGCGGAAGATTTTCTTTATGTAGACGAAGAATATTCTCGGTACACAAATTACCTGCCGCTCCCCGCTGAGGCCTGGCTAACCACATATTTTACTGCATCAGTTATATCTGAATCTGCTAGAAACTTCCGGACATTTCCTCTGATTCTCATGGCCCTGGATATGGTCCAAAGAGATGACATTATAAAAGAGAAAGGACTGAACTTTCTTTGGGAAGAACATTCAATGGAGAGAGGAGGTTCTTGGATTGACACAAGCAAGCAGGGATTTAGTGGCTCAGCCGACTATGAAGAGAGCAATTTAGTTACCCAGAAGCCTTCGGCTAGTTCCAAAGTCAATAATAAGCCTAAAGATAAAAAGAAACAGCTTGAAGAGCTcctagaaatagaaataaaactgTACCAATCGTACAGTGACTTTATGAatcaaagaggagaaaaaataGATATATTCAATATCGCAGAAAAATACGGAATGATTCAACATAATTCTGTTGTTGAttacaacaatttaaaaaatacagtaaacaGCAATTCTCAAGCGTCCGGCTCACGTCCAAACACTTTATGGgtagcactttataataactacaCACAATTTGGTAGTTTCTTTCAGTGGTAACGATTTCCTTTCCTTGGTaacccaactgtcccgttcttcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92245 lncRNA downstream 99262 41319213 ~ 41401901 (-) False LOC120560231
TU92246 lncRNA downstream 99262 41319213 ~ 41401901 (-) False LOC120560231
TU92242 lncRNA downstream 99262 41379368 ~ 41401901 (-) False LOC120560231
TU92397 lncRNA downstream 246838 41248200 ~ 41254325 (-) False G68989
TU92416 lncRNA downstream 270730 41229514 ~ 41230433 (-) False G69004
XR_005639456.1 lncRNA upstream 9091 41518266 ~ 41520540 (-) True LOC120560251
XR_005639459.1 lncRNA upstream 11395 41520570 ~ 41522489 (-) True LOC120560253
XR_005639458.1 lncRNA upstream 11395 41520570 ~ 41521297 (-) False LOC120560253
TU92466 lncRNA upstream 73335 41582510 ~ 41588526 (-) False G69032
TU92463 lncRNA upstream 75781 41584956 ~ 41588526 (-) True G69032
XM_039802494.1 mRNA downstream 4934 41488629 ~ 41496229 (-) True LOC120560221
XM_039802433.1 mRNA downstream 46677 41432594 ~ 41454486 (-) True LOC120560190
XM_039802516.1 mRNA downstream 139393 41358296 ~ 41361770 (-) True LOC120560235
XM_039802478.1 mRNA downstream 154859 41339172 ~ 41346304 (-) False LOC120560207
XM_039804054.1 mRNA upstream 28350 41537525 ~ 41548904 (-) True LOC120561099
XM_039802519.1 mRNA upstream 62969 41572144 ~ 41582352 (-) True LOC120560239
XM_039802497.1 mRNA upstream 79746 41588921 ~ 41596910 (-) True bag4
XM_039802475.1 mRNA upstream 287086 41796261 ~ 41815906 (-) True pold2
XM_039804056.1 mRNA upstream 328451 41837626 ~ 41858498 (-) True LOC120561103
TU92249 other downstream 99262 41380388 ~ 41401901 (-) False LOC120560231
TU92377 other downstream 423698 41076005 ~ 41077465 (-) True G68985
TU92335 other downstream 550556 40924074 ~ 40950607 (-) True G68952
TU92028 other downstream 1170486 40324206 ~ 40330677 (-) False ppp2r2aa
XR_005639415.1 other downstream 1474420 40002598 ~ 40026743 (-) False LOC120560061
TU92275 other upstream 243361 41752536 ~ 41829133 (-) True G68897
TU92285 other upstream 245697 41754872 ~ 41782162 (-) True G68907
TU92260 other upstream 327372 41836547 ~ 42073980 (-) True G68883
TU92301 other upstream 419313 41928488 ~ 41929179 (-) True G68923
XR_005639438.1 other upstream 589611 42098786 ~ 42107121 (-) False rnf34a

Expression Profile