RNA id: XM_039802471.1


Basic Information

Item Value
RNA id XM_039802471.1
length 2008
RNA type mRNA
GC content 0.57
exon number 11
gene id LOC120560203
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42078586 ~ 42094518 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAGTTTGGTTTTCAGCGCGAGGACACACAGCTACGGTGGCGacagtttagacaccaaaactacccgttaagtttaggaaacagatcgtggtttggattaaaactcTCCCGAGGACCGAACACGCGCGTCCTGGGGCGAAATATTAAATTTATACTTTTATATTAGCCGAGATTTAGCGTAATTTGGCCATTTCAAGCCATAACCGCGAGCCAAAGGAGCCGACTCTGCGCGAGCCCGGGAAAGGTTGCCTGAGTCCGGGATTCAGATGGAGGGCAGCGCCGCTGTCAGCTCCACGGCAGCCCGGGAAAGGTTGCCTGAGTCCGGGATTCAGATGGAGGGCAGCGCCGCTGTCAGCTCCATGGTTCTGTTCGAGGATGAGTCGGTGGATGTTCGGTACGGAACCGGAGCCCAGCTCCAGCTGTCGCCGTGTGGCTGTGAGTTCACGCTGCTGAAACCCGCTGACGTCTCCGGACATCCTCCGAGACCCGCCGAGAGATTCCGACATCCTCCGAAACCAGCCGAGAGACTCCGACAGAGGACCAGGTTCACCGTCAGCTCTTACAAGGAAGTTCTGGTCGCTGCGTTGGCGTTCAGGAATAAATACGCTCGCCGCCCGTACCTACCGGAGGAACTCGTCCCCGCCAAACACACGAAGCCTTTCTTCAGCGTGGACTCAGACGTGCGGTGGCCTGAGTGGTCTTCCTGTGCGGCTGAACTCGGGCCTGGAGGCGAGACTATCGTCAGGTCTGAGGGGGGGCGAGCAGCGCTGATGCTGGCGCCATCGGGCGAAGAATTCTCCGTGGAGTTTGCGTGCAGCCTCAGTCAGACGGCGAGCCGATACACCGACGATGAGAAGCCAGAGACGGTGTACCGATCCACCACGGTGGTCCAGCATCACTCCGTCTGCTCTGTTCCCTCCGTCTGGTCCTACCCTCTCTGGCTGGCTCGCCAACTCCACGCCTCTCGTCTCTGGCTGGCTCGCCAACTCCACGCGTCTCGTCTCCCTGAGCCAGAAGACGTCCCTGCAGACAGAGACGTAAACCCGCTGGACATTTCCACCGTAGAGCGAAGCTCTCGCCTCCCAGAGGCGCTGCCTCTCACGTGTTCATCCCCCCACTGGCACAGGTGGAAAGTTAAAGATGTCGTTTCAGATGAAGATCTTCCAACAGAGCTGGTGAAGGTGATGTGGTGGCACGGAGTCACGTACAGGATCCTGAACGGGACGGTCCCTGTCGTGGAGGTGTCCCCCGGAGATGGATCAGTCCTCCGCTCTAACGGCGTCCTGAATACTTATTTTACTCATCACAGACCTGATCTCCCATCAGGACGGGTGAACGAGGTAACGTACCACGTGGACACCCTCCCCCCCGACGTCCCGGGACAGCTGTTCTCCGTGGGGGCTGTCGTGAGGCGCGCCAGCAGGATCCTGGCGTGCTTCACCGAGGCCAGGCGGTCGCTGGCGCTCCCCGCCACGCCCAGCTGCCTCACGGAGCTCAGAGAGGGGCGACATTTGTCTGGACCAGTGAGGATGGAAGAAGGTCTGTCCAGTCCTGTTCCTGTTGAGCAGGACGTCCCAGACACGGTAGAGAATCGGTCGGATCTTGTAGCTGCAGAACTGGAGAAGATAAAAAGATTCAACTTTCTTCTGGAGAACAACCACCTGCTGAGGAACCAGACAGGAAGTGTGAGACAGGAAGCTGTCGCTGCAGACGAGGAGACTCCCGGAGCGGTGAGCGAGCGCTGCGTCGCCGAGGCTCTGCAGAGAACTTCCAGAACCATCCGAGACATCGACGCTCTCATATCTGACTGCAAAGAGCCCTGaatggggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattcggactatattttatatttctagGTCCGACTGAAATAAAGATTTTTCTTCATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92292 lncRNA downstream 35922 42039860 ~ 42042664 (-) True G68914
TU92552 lncRNA downstream 39121 42038990 ~ 42039465 (-) True G69094
TU92293 lncRNA downstream 85095 41988436 ~ 41993491 (-) True G68915
TU92542 lncRNA downstream 86164 41956372 ~ 41992422 (-) True G69087
TU92541 lncRNA downstream 130036 41947779 ~ 41948550 (-) True G69086
TU92562 lncRNA upstream 18274 42112792 ~ 42113892 (-) False G69104
TU92563 lncRNA upstream 18726 42113244 ~ 42114759 (-) True G69104
TU92572 lncRNA upstream 115420 42209938 ~ 42223138 (-) True G69110
TU92596 lncRNA upstream 271511 42366029 ~ 42443845 (-) True G69127
TU92599 lncRNA upstream 301563 42396081 ~ 42413217 (-) True G69129
XM_039804060.1 mRNA downstream 31077 42034223 ~ 42047509 (-) True LOC120561108
XM_039804059.1 mRNA downstream 56229 41938981 ~ 42022357 (-) True LOC120561107
XM_039804057.1 mRNA downstream 196573 41867239 ~ 41882013 (-) True LOC120561104
XM_039804056.1 mRNA downstream 220088 41837626 ~ 41858498 (-) True LOC120561103
XM_039802475.1 mRNA downstream 262680 41796261 ~ 41815906 (-) True pold2
XM_039802501.1 mRNA upstream 3809 42098327 ~ 42107117 (-) False rnf34a
XM_039802500.1 mRNA upstream 3809 42098327 ~ 42107116 (-) True rnf34a
XM_039802504.1 mRNA upstream 4253 42098771 ~ 42107121 (-) False rnf34a
XM_039802503.1 mRNA upstream 5809 42100327 ~ 42107121 (-) False rnf34a
XM_039804062.1 mRNA upstream 17230 42111748 ~ 42136339 (-) True LOC120561110
TU92260 other downstream 4606 41836547 ~ 42073980 (-) True G68883
TU92301 other downstream 149407 41928488 ~ 41929179 (-) True G68923
TU92275 other downstream 249453 41752536 ~ 41829133 (-) True G68897
TU92285 other downstream 296424 41754872 ~ 41782162 (-) True G68907
TU92249 other downstream 676685 41380388 ~ 41401901 (-) False LOC120560231
XR_005639438.1 other upstream 4268 42098786 ~ 42107121 (-) False rnf34a
XR_005639437.1 other upstream 5857 42100375 ~ 42107122 (-) False rnf34a
TU92299 other upstream 13112 42107630 ~ 42116261 (-) True G68921
TU92564 other upstream 18274 42112792 ~ 42114159 (-) False G69104
TU92567 other upstream 36093 42130611 ~ 42132581 (-) True G69105

Expression Profile