RNA id: XM_039802475.1


Basic Information

Item Value
RNA id XM_039802475.1
length 1744
RNA type mRNA
GC content 0.59
exon number 11
gene id pold2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41796261 ~ 41815906 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATGCAGCATAAACTGTGACGTTTTCGCGGGAACTGATCTTTCTGCTCGCTGTGTTGACAAGAACTATACCGGGTATAAAACTATACCGGGTATAAATCTATACCGGGTATAAAACTATACCACGGTATAAAACTATACCGGGTATAAAACTGCTTTCCCTCTTCGAAGGACCGTCATGTTCTCCGACATGAGCGCCGGGAAGCCGGGCTCCTCTCTGCTGTGCCGCCCGGCCTCGGGGGACCAGGACCAGGGCCCGGTGTTTGAGCGCGTGTCGCCGGCCTACAGTCTCTGCTCCGAGCGCTACACGGTCGGCGAGCGGAGCTTCAGCCGCCAGTACGCTCACATCTACGCCACACGACTCATGCAGATGCGGCCCCTGCTGTCAGAGAGAGCGCAGCAGAAGTGGGGATCAGACGTGCTCATCAGGAAGCTGTGTGATCTTCAGACAGGAGAGCagtgttgcattgtgggaacgTTGTTCAAGCGTATGGAGCTGCAGCCTTCGATCCTGAAGGAGATCAGCGAGGAGCACAACCTGCTGCCTCAGCCGGCTCGAGTCAAATTCATCAGCGACACAGACGAGCTGATTCTGGAGGACGAGCTGCAGAGGATCAAACTGGAGGGAAACATCGACAGAGACAAGTGTGTCACAGGAAGTGTTATCGCGATATTCGGAGCCGAGAAGAATGACGGGAAGTTCACGGTGGAGGACTTCTGCCTCGCAGATCTTCCTCTGCAGACCCCGAGACCTGAACTCACCTCTGAccggTTTGTTCTCCTGGTCTCTGGACTGGGTCTGGGCAGCAGTGATGGCGACAGCATGTTGGGTCTGCAGCTGCTGGTTGACATGGTAACGGGTCAGCTGGGCGGCGAGGGCGAGCAGAGCGGAGCGGCGAGCATCTCCCGAGTCCTGCTGGCGGGAAACCTGCTGAGCCAAAACACCCaggacaaggatgcacacacCAAGcCCAAGTTCCTGACCAAGAAGACGCAGGCGGGCAGCGTGGAGGCCATGCGTCTGCTGGACGAGCTGCTGCATCAGCTGGCGGCCTCGGTTCCCGTGGACGTGATGCCGGGCCAGTTCGACCCCACCAACTACACGCTGCCCCAGCAGCCTCTGCACCGCTGCATGTTCCCGCTGGCGTCCGTCTTCCCCACGCTGCAGCTCGCCTCCAACCCGCACCAGGCGCACATCCACGGAGTCAGGTTCCTGGGGACTTCGGGCCAGAACGTGAGTGATATCCAGAAGTACAGCAGCATGGAGGACCACCTGGAGATCCTGGAGGAGACGCTGAGGCTCCGACACCTCGCCCCGACGGCGCCCGACACGCTGGGTTGTTACCCGTTCTACCAAAAAGACCCGTTCATCCTGGAGGAGTGTCCCCACGTCTACTTCAGCGGCAACGCCCCCGAATTTGGATCCAAACTCGTCAAAGGTGCGGAGGGACAGGAAGTGCTGCTGGTGTGCGTGCCAGACTTCAGCAGCAGCCAGACGGCGTGCCTGGTCAACCTGCGCACGCTGACCTGCGAGCCGCTCGCCTTCTCGGCGTTCTCCGCCCACGGAGAAGACGAGAGCGAGATGAACGTCAGCCACTGAGGGGCCAGATACTCCGAGTCTTcttcagacagagagagagacagagagagagacagacacagagagagagagagacagacagacagacagacagacagacatagacagagagacagacacacagagagacacagacagacagagag

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02328 POLD2; DNA polymerase delta subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92295 lncRNA downstream 23534 41767003 ~ 41772727 (-) True G68917
TU92502 lncRNA downstream 51773 41743438 ~ 41744488 (-) True G69062
TU92496 lncRNA downstream 62461 41733369 ~ 41733800 (-) True G69058
TU92257 lncRNA downstream 94790 41660768 ~ 41701471 (-) False G68882
TU92252 lncRNA downstream 94790 41700054 ~ 41701471 (-) False G68882
TU92279 lncRNA upstream 12423 41828329 ~ 41859014 (-) True G68901
TU92296 lncRNA upstream 47870 41863776 ~ 41864424 (-) True G68918
TU92522 lncRNA upstream 86995 41902901 ~ 41903622 (-) False G69078
TU92524 lncRNA upstream 86995 41902901 ~ 41903622 (-) True G69078
TU92305 lncRNA upstream 111828 41927734 ~ 41928031 (-) True G68927
XM_039802497.1 mRNA downstream 199351 41588921 ~ 41596910 (-) True bag4
XM_039802519.1 mRNA downstream 213909 41572144 ~ 41582352 (-) True LOC120560239
XM_039804054.1 mRNA downstream 247357 41537525 ~ 41548904 (-) True LOC120561099
XM_039802467.1 mRNA downstream 282802 41502111 ~ 41513459 (-) False LOC120560202
XM_039804056.1 mRNA upstream 21720 41837626 ~ 41858498 (-) True LOC120561103
XM_039804057.1 mRNA upstream 51333 41867239 ~ 41882013 (-) True LOC120561104
XM_039804059.1 mRNA upstream 123075 41938981 ~ 42022357 (-) True LOC120561107
XM_039804060.1 mRNA upstream 218317 42034223 ~ 42047509 (-) True LOC120561108
XM_039802472.1 mRNA upstream 262680 42078586 ~ 42094518 (-) False LOC120560203
TU92285 other downstream 14099 41754872 ~ 41782162 (-) True G68907
TU92249 other downstream 394360 41380388 ~ 41401901 (-) False LOC120560231
TU92377 other downstream 718796 41076005 ~ 41077465 (-) True G68985
TU92335 other downstream 845654 40924074 ~ 40950607 (-) True G68952
TU92028 other downstream 1465584 40324206 ~ 40330677 (-) False ppp2r2aa
TU92260 other upstream 20641 41836547 ~ 42073980 (-) True G68883
TU92301 other upstream 112582 41928488 ~ 41929179 (-) True G68923
XR_005639438.1 other upstream 282880 42098786 ~ 42107121 (-) False rnf34a
XR_005639437.1 other upstream 284469 42100375 ~ 42107122 (-) False rnf34a
TU92299 other upstream 291724 42107630 ~ 42116261 (-) True G68921

Expression Profile