RNA id: XM_039802485.1


Basic Information

Item Value
RNA id XM_039802485.1
length 1452
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC120560212
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42209201 ~ 42212702 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTACACCTGGTTCACATTAGCTTGATTGACTCTCTGTCCTTTATAGAGGGCCGGAGGTTCAGGTCTGGTGATCTCTCAATCCTCACATCCAGAAAAGttgacgatgatgatgatgtgtgcaGCCGTGGGTCTCTGGGTCCTATCAGCGGTGATCTGCGTGGCCAGAGGCCACGACAACGACCAGGCCATCAAAGGCTCTGTAGTGGACTGCAGCGCCAACTCCATGGTGAACGAAGCAAACGACAGCTTCTCCCTGGTGAACACCGCCAACAACAAGTTTTCCTTCCGACTCTACAGAAAGTTAGCAGCTCAAGCTGACTCACAGGGACAGAATATCTTCTTCTCCCCCTTTTGTGTGTCGACCGCCTTGGCTGCGTTGTCTGTGGGAGCGCAGGGGGAGACTCACCATCAGCTTTTCAGTGGTCTGGGTTTCAACAGCTCCCTCCTGACGCAGACGGATGTGGACCAGGCcttccagaccttcctccagagGGCCAACAACACATCTCAGGAGGACGCCAGCGAAGGGACTGCAGTGTTTGTGGACGACCACTTCAAGCCAAAACCAAAGTTCCTGCAGACCCTGACTCAGTCATACTTTGCCGATGGGTTCAATGTGGACTTCAGCCAAGCCACAGAAAGTGCTGATACCATCAATAAGTACGTGGAGGAGAAGACCAACGGGAAGATTGACAAGCTGGTGGAAAacctggatccaaacacagtcATGTATCTCATCAGCTACATCTACTACAAAGGAAAGTGGGCGACTCCGTTTGACCCTAAACTCACCAAGCAGGACGACTTCAACGTGGACGAAAACACCAAGGTTCCAGTCCTCATGATGAATCTGGAGGATGATTTCTACACCTATCACGACGACCAGCTGAACACAACAGTCCTTCAGCTCCCCTTCACCAGCTCCTACTCCATGCTGCTGATGTTGCCTGACGTCATGGCAACGCTGGAGAACGCAATCTGCCCAAAACTCGTCACCAAATGGTTGAAGGCTATGATGACACCCAGgagacaTGAAGTATATATTCCAAAGTTCTCCATCAAGTCTTCCTACAACCTCAACGATGTGCTGTCAGAAATGGGAATGACAGACCTGTTTGGTGATCATGCAAATTTCAGAGGCATTTCAGAGAAGCAAGGACTGGCAGTCTCAGATGTTGTTCACCAAGCTACGCTGGACGTGGACGAGACCGGAGCCACCGCTGCAGCTGCCACAGGCATCGGCATCGGACTGACTGCCATCCTGTTCCCTGTCCCGGTGTTGAAGTTCAATCGTCCATTCATGGTCATCATCACTGAAAGTAACGCGGAGAAAATCCTCTTCTTGGGAAAGATTATCATCCCAACCATCTGATGGATCATCACTTTGTTTGCTCAAGCACAGCTGTTGCATCTCATATAaacaaatcagaaaaaaaatggtttgtCTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92563 lncRNA downstream 94442 42113244 ~ 42114759 (-) True G69104
TU92562 lncRNA downstream 95309 42112792 ~ 42113892 (-) False G69104
TU92297 lncRNA downstream 118672 42090073 ~ 42090529 (-) True G68919
TU92303 lncRNA downstream 119281 42044916 ~ 42089920 (-) True G68925
TU92292 lncRNA downstream 166537 42039860 ~ 42042664 (-) True G68914
TU92596 lncRNA upstream 153327 42366029 ~ 42443845 (-) True G69127
TU92599 lncRNA upstream 183379 42396081 ~ 42413217 (-) True G69129
TU92602 lncRNA upstream 213050 42425752 ~ 42495934 (-) True G69131
TU92622 lncRNA upstream 284863 42497565 ~ 42536958 (-) False G69140
TU92626 lncRNA upstream 284863 42497565 ~ 42536958 (-) False G69140
XM_039802495.1 mRNA downstream 29903 42175476 ~ 42179298 (-) True LOC120560222
XM_039804062.1 mRNA downstream 72862 42111748 ~ 42136339 (-) True LOC120561110
XM_039802504.1 mRNA downstream 102080 42098771 ~ 42107121 (-) False rnf34a
XM_039802503.1 mRNA downstream 102080 42100327 ~ 42107121 (-) False rnf34a
XM_039802501.1 mRNA downstream 102084 42098327 ~ 42107117 (-) False rnf34a
XM_039802496.1 mRNA upstream 29034 42241736 ~ 42256884 (-) True hpdb
XM_039802434.1 mRNA upstream 49723 42262425 ~ 42271211 (-) True LOC120560191
XM_039802513.1 mRNA upstream 445654 42658356 ~ 42662019 (-) True LOC120560234
XM_039802515.1 mRNA upstream 445654 42658356 ~ 42661523 (-) False LOC120560234
XM_039804064.1 mRNA upstream 450661 42663363 ~ 42809589 (-) True LOC120561114
TU92567 other downstream 76620 42130611 ~ 42132581 (-) True G69105
TU92299 other downstream 92940 42107630 ~ 42116261 (-) True G68921
TU92564 other downstream 95042 42112792 ~ 42114159 (-) False G69104
XR_005639437.1 other downstream 102079 42100375 ~ 42107122 (-) False rnf34a
XR_005639438.1 other downstream 102080 42098786 ~ 42107121 (-) False rnf34a
TU92624 other upstream 322565 42535267 ~ 42536075 (-) False G69140
TU92678 other upstream 560289 42772991 ~ 42809622 (-) False LOC120561114
TU92739 other upstream 757382 42970084 ~ 43014065 (-) False G69229
TU92741 other upstream 757382 42970084 ~ 43014065 (-) False G69229
TU92743 other upstream 789553 43002255 ~ 43003347 (-) False chek2

Expression Profile