RNA id: XM_039802496.1


Basic Information

Item Value
RNA id XM_039802496.1
length 1685
RNA type mRNA
GC content 0.50
exon number 14
gene id hpdb
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42241736 ~ 42256884 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAAACTTCTCTCTCAGTTTTTAACTTCAGAGTTCATTCAGAGAGTTTTACCCCGACGGAAACATGACGACGTACACAGATAAAGGTGAAAAGCACGAGCGCGGCAGCTTCCTCTGCTTCGATCACCTGACCTTCTGGGTCGGAAACGCCAAACAGGCGGCGTCCTATTACTGTAACAAGATGGGCTTCGAGCCGCTGGCGTACCGCGGTCTGGAGACGGGCAGCCGCGACGTGGTCTCGCACGCCGTCAAACAGGGCAAGATCGTCTACGTGTTCTCATCGGCCCTCAACCCTGGAAACAAAGAGATGGGAGATCATCTGGTGAAACACGGAGACGGCGTGAAGGACGTGGCGTTCACCGTGACAGACTGTGACTTCCTCGTGCAGAAAGCCAGAGAGCGAGGAGCGCTGATCGTCACGGAGCCGCACACGCTGGAGGATAAGAGCGGGAAGGTCCGGCTGGCCGTGCTGCAGACGTACGGAGACACCACGCACACGCTGGTGGAGCGCAGCGGCTACAGCGGCCTCTTCCTGCCGGGCTTCCACCCCCCGCTGTTCAAAGACCCGCTGCTGGCCACACTGCCAAGCGGAGAGCTGAACTTCATCGATCACGTGGTGGGAAACCAGCCGGAGGACCACATGGTCCCAGCGGTGGACTGGTATCAGAGGAACCTTCTGTTCCACCGGTTCTGGTCCGTGGACGACAAGCAGCTGCAGACGGAGTTCAGCGCGCTGCGCTCCATCGTCGTGGCCAATCACGAGGAGACGGTGAAGATGCCAATCAACGAGCCAGCCATGGGCAAGAGGAAGTCTCAGATACAGGAGTATGTGGAGTACTACGGAGGTCCAGGTGTGCAGCACATAGCCATGAACACATCAGATATCATCACTGCAATCCGTAACCTGAAGCAGCGAGGGATGGAGTTCATGAGAGTACCGGACACGTACTACGAGCAGCTGAGAGAAAACCTCCAACACTCAAAGGTCCAGATCTCAGAGGACCTGGATGTTCTGCAGGCGCTGAACATCTTGGTGGACTACGATGACGATGGGTATTTACTCCAGATCTTCACCAAGCCGGTTCAGGATCGTCCCACCGTGTTTTTGGAAGTGATTCAGAGACACAACCACCAGGGCTTTGGAGCAGGAAACTTCAAGTCTCTGTTTGCAGCCATCGAAGCCGATCAGAACCTTCGGGGAAATCTGACGGTCCTGACGCCCAACGGAGACTCAAACAACATGTGATCCCAGCGTTCAAACAACATGTGATCCCAGCGTTCAAACAACATGTGATCCCAGCGCTCACTTCTCTTtatacttgtataaatataccaATAACGTGCTACAGTTACAAATGCACAAAGCTTGTTTTTTTATCAAAGTTGTTACTCTTTAATGTCTCTGTGAATTGCATGTTTTATTACAACAGAGTAGTACTTTATTATAATCTCTCCTGATGTTTCTGGAAGACTTTGTCACAACTTTacaatgattttctttttttaatataaaatgttaaCAAGAAAAAAGACATTATTATGGGACAAGCTTGACTCAAGCAGAACATCGTTTAGAGCTTTCAGGAATGAAAACATTTAACTGTACACCTCTGTTATCCTTTGTTGTAACAGAAACATatctgtatgaatgtgtgaaaCTTCATAAACTGTGATGTGAAACCAAA

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K00457 HPD, hppD; 4-hydroxyphenylpyruvate dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92572 lncRNA downstream 18598 42209938 ~ 42223138 (-) True G69110
TU92563 lncRNA downstream 126977 42113244 ~ 42114759 (-) True G69104
TU92562 lncRNA downstream 127844 42112792 ~ 42113892 (-) False G69104
TU92297 lncRNA downstream 151207 42090073 ~ 42090529 (-) True G68919
TU92303 lncRNA downstream 151816 42044916 ~ 42089920 (-) True G68925
TU92596 lncRNA upstream 109145 42366029 ~ 42443845 (-) True G69127
TU92599 lncRNA upstream 139197 42396081 ~ 42413217 (-) True G69129
TU92602 lncRNA upstream 168868 42425752 ~ 42495934 (-) True G69131
TU92622 lncRNA upstream 240681 42497565 ~ 42536958 (-) False G69140
TU92626 lncRNA upstream 240681 42497565 ~ 42536958 (-) False G69140
XM_039802485.1 mRNA downstream 29034 42209201 ~ 42212702 (-) True LOC120560212
XM_039802495.1 mRNA downstream 62438 42175476 ~ 42179298 (-) True LOC120560222
XM_039804062.1 mRNA downstream 105397 42111748 ~ 42136339 (-) True LOC120561110
XM_039802504.1 mRNA downstream 134615 42098771 ~ 42107121 (-) False rnf34a
XM_039802503.1 mRNA downstream 134615 42100327 ~ 42107121 (-) False rnf34a
XM_039802434.1 mRNA upstream 5541 42262425 ~ 42271211 (-) True LOC120560191
XM_039802513.1 mRNA upstream 401472 42658356 ~ 42662019 (-) True LOC120560234
XM_039802515.1 mRNA upstream 401472 42658356 ~ 42661523 (-) False LOC120560234
XM_039804064.1 mRNA upstream 406479 42663363 ~ 42809589 (-) True LOC120561114
XM_039802518.1 mRNA upstream 562990 42819874 ~ 42822645 (-) True LOC120560237
TU92567 other downstream 109155 42130611 ~ 42132581 (-) True G69105
TU92299 other downstream 125475 42107630 ~ 42116261 (-) True G68921
TU92564 other downstream 127577 42112792 ~ 42114159 (-) False G69104
XR_005639437.1 other downstream 134614 42100375 ~ 42107122 (-) False rnf34a
XR_005639438.1 other downstream 134615 42098786 ~ 42107121 (-) False rnf34a
TU92624 other upstream 278383 42535267 ~ 42536075 (-) False G69140
TU92678 other upstream 516107 42772991 ~ 42809622 (-) False LOC120561114
TU92739 other upstream 713200 42970084 ~ 43014065 (-) False G69229
TU92741 other upstream 713200 42970084 ~ 43014065 (-) False G69229
TU92743 other upstream 745371 43002255 ~ 43003347 (-) False chek2

Expression Profile