RNA id: XM_039802500.1


Basic Information

Item Value
RNA id XM_039802500.1
length 1679
RNA type mRNA
GC content 0.57
exon number 8
gene id rnf34a
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42098327 ~ 42107122 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAGGTTGATTAGAGTCAACGAGAAGGGGCGACAGAAGCGGTGGCAGCGGCAGAAGCGGTGGCAGCGGCAGCGGCAGAAGCGGTGCTCGGGTCTCGGCCGTTGCTCTCATCAGGACGCATTCAGGCAGTTAAAGaagtaatgatgatgatgatgctccATGTTGAAATGTTTGCCCCGCCAGTCTCCTCCTTCACGGTAGAAACGCCAGAGCTGCAATGAAGGCAGGAGCCTCGTCCATGTGGGCTTCATGTTGTGGTCTGCTGAATGACGTCATGGGCACCGGGGCGGTCAGAGGCCAGCAGCCGGGGTTCGGGGCCGGGGCGGGACCCTTCAGGTTCGCCCCCAGCGCGGGGTACTCCACGTACCCCCCCAGCAGCTCAGGGAGCCCCAGTCCGGTGTGCAAGGCCTGCGGTCAGGCCTTCTCTGTCTTCAGGAGGAAGTATATGTGCGCTGACTGCAGGAAGAGTTTCTGCTGCGTGTGTTCGGAGCTCCAGGACGACCTCCGCCGGTGCGGCGTGTGCCGGTTGCTACGGGCGACGGCGTTCCAGCGCCCGCGGCTGATGCGTCTGCGGGTGCGAGAACTGCGACAGTATCTACTGCTGCGCAACGTCTCCACGGAAACCTGCAGGGAGAAGGAGGACCTGGTGGAGCTGGTGCTGTGTCACCACGGCAACCATGAGGAGGAGGACGTGGGCTCGCCGTCCGCCGCGCGGTCGGCCTCCGAGCTGTCGCCGCTCGCTGCCGCGCAGGGACAGCCAATCAGCCGCAGCGACAGCTCCGACACCAACCAGGACTCGGGTGATGCAACGTCTGAGTCTCTGCTGAACCTGGACGCCGGCGAACGCACTCCGGAGGTCAGTCCTCCGACGCGGCGCCGAGCGTCTCTGTCGGACGTGTCCAGTCTGCGAGACGTGGAGGATCTGTCCGTCCGCCAGCTGAAGGAGATCCTGGCCAGGAACTTCGTCAACTACTCGGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGCGTGGGCCGCCTGTACCGGGAGACCCAGGACAACCGGAGGTCACGGGAGAATGTGAGCAGTACTGTAACCTCAGATGTGGCCCCCCCCCCTACTCTCTGCAATGGCGCTGTGGCCGatggtGAGAAGAGTCCTCTGGCGCTCCATGACGACGGTCTGTGCCGTATCTGCATGGACGGTGTCATCGACTGCGTCCTGCTGGAATGCGGTCACATGGTCACCTGCACCAAGTGCGGCAAGAGGATGAACGAGTGTCCCATCTGCCGGCAGTACGTGGTCCGCGCCGTGCACGTCTTCAAGTCCTAacgctccacacacacacacacacacacacacacacacacacacacacacaaaactctgATCCTGTGGATGCTACAACTCTCACCTTCTTTGCACATTGAAGTATTATGAACAGAGTTATCTACGGGGTTACATATGTCTCATTATGTGTGAAcatctgtgtgtgaatgtgtaatcTGTAAATATTAACCCTGTGTTGTCTTCCCTGtcctcctttttgtttttctgggtcaaaatgtaaaaaacgaTTCCAACGTTTTGGTCGACATCttcgtcactttttttcaaagtttctgtcaatatttttctgcgctttttttacgttttttaaagattttacattttttgtcacttttttgacatttgattC

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20804 RNF34; E3 ubiquitin-protein ligase RNF34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92297 lncRNA downstream 7798 42090073 ~ 42090529 (-) True G68919
TU92303 lncRNA downstream 8407 42044916 ~ 42089920 (-) True G68925
TU92292 lncRNA downstream 55663 42039860 ~ 42042664 (-) True G68914
TU92552 lncRNA downstream 58862 42038990 ~ 42039465 (-) True G69094
TU92293 lncRNA downstream 104836 41988436 ~ 41993491 (-) True G68915
TU92562 lncRNA upstream 5676 42112792 ~ 42113892 (-) False G69104
TU92563 lncRNA upstream 6128 42113244 ~ 42114759 (-) True G69104
TU92572 lncRNA upstream 102822 42209938 ~ 42223138 (-) True G69110
TU92596 lncRNA upstream 258913 42366029 ~ 42443845 (-) True G69127
TU92599 lncRNA upstream 288965 42396081 ~ 42413217 (-) True G69129
XM_039802472.1 mRNA downstream 3809 42078586 ~ 42094518 (-) False LOC120560203
XM_039802471.1 mRNA downstream 3809 42078586 ~ 42094518 (-) False LOC120560203
XM_039802470.1 mRNA downstream 3809 42078586 ~ 42094518 (-) True LOC120560203
XM_039804060.1 mRNA downstream 50818 42034223 ~ 42047509 (-) True LOC120561108
XM_039804059.1 mRNA downstream 75970 41938981 ~ 42022357 (-) True LOC120561107
XM_039804062.1 mRNA upstream 4632 42111748 ~ 42136339 (-) True LOC120561110
XM_039802495.1 mRNA upstream 68360 42175476 ~ 42179298 (-) True LOC120560222
XM_039802485.1 mRNA upstream 102085 42209201 ~ 42212702 (-) True LOC120560212
XM_039802496.1 mRNA upstream 134620 42241736 ~ 42256884 (-) True hpdb
XM_039802434.1 mRNA upstream 155309 42262425 ~ 42271211 (-) True LOC120560191
TU92260 other downstream 24347 41836547 ~ 42073980 (-) True G68883
TU92301 other downstream 169148 41928488 ~ 41929179 (-) True G68923
TU92275 other downstream 269194 41752536 ~ 41829133 (-) True G68897
TU92285 other downstream 316165 41754872 ~ 41782162 (-) True G68907
TU92249 other downstream 696426 41380388 ~ 41401901 (-) False LOC120560231
TU92299 other upstream 514 42107630 ~ 42116261 (-) True G68921
TU92564 other upstream 5676 42112792 ~ 42114159 (-) False G69104
TU92567 other upstream 23495 42130611 ~ 42132581 (-) True G69105
TU92624 other upstream 428151 42535267 ~ 42536075 (-) False G69140
TU92678 other upstream 665875 42772991 ~ 42809622 (-) False LOC120561114

Expression Profile