RNA id: XM_039802515.1


Basic Information

Item Value
RNA id XM_039802515.1
length 1719
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC120560234
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42658356 ~ 42662019 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGGAACTGATCCTGAACCGCTACAGAGCGCTTTTCGACAGGGCTGGATGATATGCGTTTGTTCAGATGGGATTCTTTCATGATACATGGGCGCCGGTTGGATCTGTATTGGGGTCGAGGGACTCCTCCGAGGGGGGCCCGGCAGCTGATGGGGGCGCCAAGGAGGCGTCTCATTGGCCGGAGCAGGACTGCATGCAGCTGAACCCGTCGTTCCGAGTCATCGCCATCAACTCGCTGCTCGCCATCGACATCAGCCTGTCCAAGCGCCTGGGGGTGTGCGCCGGGACGCGCGGCCGGGGGGCGCCGCTGCGCTCCATGGTGAGCCTGCTGGCCCTCAGCGGACACGCCCTGCCCTGGCTCTGCGGGACGCTGGTCTGTCTGTGGAGCAGCAACACGCTGGCCGGACAGGAAGTCCTCGTCAACCTGCTGCTGGCTCTGATCCTGGATCTGATGACCGTCGCTGGGGTGCAGAAGTTGGTCAAACGCCGAGGACCATGGGATTTCCCTCCAGGGTTTTTGGACTACATCGCCATGGATATGTACTCTTTCCCAGCAGCCCACGCCAGCCGAGCCGCTATGGTGTCCAAGTTCCTGCTGCACCACCTGGTGCTGGCGGTGCCCCTCAGGATACTGCTCTACCTCTGGGCGCTCCTGGCCGGCGTGTCCCGGGTGCTACTGGGTAAACATCACATCTCAGACGTCGGCTGTGGATTCGCTCTCGGCTTCCTGCACTTCAGTCTGGTGGAGTCCGTTTGGCTGGACTCCGCCACCTGCCAGACGCTCATCTCCATTGGCACGCTGCGCTGGACTCCACTGGTCTGAACTGGTTCAGCTGGGAGGAAAGCTGCATTCACACTGCGAGCGCCAAAAGCTCAGAACGGGCTAAGCTTGGTCGTGCGTCAGTTTGAGGCTTCATGTCACCAGCAGCTTCCATTGACTTGTTGCTTTGTTGCTCGTAGTCTGTGAAGGTTCTCAGTCATCCAGGTTAAAGTAGCCAAGGAAGGGTGAGAAACTAAGGGCAACTGGACTTGGTTATCATTTGGACATTCTCCCGAGAAACCCAGCTGTTTAACTTCTGTTGGGGCGTTGTCAAGATGATCGATGCCGCTGCGTTTGGTTAGTGCTCCTGGCTGTTGTGAAGACAATCGTTATGGTGGTTGGAGACACCTGAGGCGGAGGCTGAATGACCGTAGTTTGAATGTATATGTAGAAAcaaaaccacacaaacacaaacgcaGACACAGAAGGTCAAAACTTAGCGGTTTACTTctaaatgaaatatttacattttagagaggCATTTTAGAGGTTTGAAAGGGGCtactcaccgtagctcttgttgtttccggccgctaCCACCTctgcagtcaaaacgagtcgatatccaAATGTGAATGAACAGACTCCAtttgaggctcctttttcaactacaaggtcaatattgtttttaaataacgaTCAAACAAGAAataatccgtgcatttatatggaactaagctttaggagctttccatctttactctcctccctgttacgttgcattcggaaATCAATTGTTTTTGACTGACAAAATGGCTGCGACCAGAAACAACCAGAGCTACGGTGAGTAGttgaaaacctttctttttagtaaactctgggtacacaaccaatgttgtcaatgcttgcattaaggtgtagagctcctggtgatacttggagcaaagtctcatgttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92668 lncRNA downstream 2434 42653635 ~ 42655922 (-) True G69175
TU92673 lncRNA downstream 6950 42650291 ~ 42651406 (-) True G69179
TU92671 lncRNA downstream 9329 42648760 ~ 42649027 (-) True G69177
TU92659 lncRNA downstream 24631 42615221 ~ 42633725 (-) True G69169
TU92638 lncRNA downstream 119172 42538779 ~ 42539184 (-) True G69149
TU92694 lncRNA upstream 34650 42696173 ~ 42703992 (-) True G69189
XR_005639462.1 lncRNA upstream 106880 42768403 ~ 42769314 (-) False LOC120560255
XR_005639461.1 lncRNA upstream 106881 42768404 ~ 42771433 (-) True LOC120560255
TU92686 lncRNA upstream 119295 42780818 ~ 42819334 (-) True G69184
XR_005639465.1 lncRNA upstream 308943 42970466 ~ 42971625 (-) True LOC120560258
XM_039802434.1 mRNA downstream 387145 42262425 ~ 42271211 (-) True LOC120560191
XM_039802496.1 mRNA downstream 401472 42241736 ~ 42256884 (-) True hpdb
XM_039802485.1 mRNA downstream 445654 42209201 ~ 42212702 (-) True LOC120560212
XM_039802495.1 mRNA downstream 479058 42175476 ~ 42179298 (-) True LOC120560222
XM_039804062.1 mRNA downstream 522017 42111748 ~ 42136339 (-) True LOC120561110
XM_039804064.1 mRNA upstream 1840 42663363 ~ 42809589 (-) True LOC120561114
XM_039802518.1 mRNA upstream 158351 42819874 ~ 42822645 (-) True LOC120560237
XM_039804065.1 mRNA upstream 160882 42822405 ~ 42854342 (-) True LOC120561115
XM_039802439.1 mRNA upstream 212374 42873897 ~ 42958273 (-) False LOC120560194
XM_039802438.1 mRNA upstream 212374 42873897 ~ 42958273 (-) True LOC120560194
TU92624 other downstream 122281 42535267 ~ 42536075 (-) False G69140
TU92567 other downstream 525775 42130611 ~ 42132581 (-) True G69105
TU92299 other downstream 542095 42107630 ~ 42116261 (-) True G68921
TU92564 other downstream 544197 42112792 ~ 42114159 (-) False G69104
XR_005639437.1 other downstream 551234 42100375 ~ 42107122 (-) False rnf34a
TU92678 other upstream 111468 42772991 ~ 42809622 (-) False LOC120561114
TU92739 other upstream 308561 42970084 ~ 43014065 (-) False G69229
TU92741 other upstream 308561 42970084 ~ 43014065 (-) False G69229
TU92743 other upstream 340732 43002255 ~ 43003347 (-) False chek2
TU92737 other upstream 343063 43004586 ~ 43018251 (-) False chek2

Expression Profile