RNA id: XM_039802518.1


Basic Information

Item Value
RNA id XM_039802518.1
length 2101
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC120560237
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42819874 ~ 42822645 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCCCTCAGCACACCCCTCAGCTGCACACCCCTCAGCCTCAGCagcatcttcctcctcctcaacacacacaggagcagctAGCCCCTTTTGGGAAGCAGCCTCCGTTCCTGTTGCTGGACCAGCAGGAAATGGAGCAGGAGCCAGGAACAAACCTGAAAAACCTCCTCCAGGGCAGCGGACGTAGCCCTGGAATGAGGAACCTGAAATTCCCTCCTTCAATTGAAAACTACCTCCTACCTTGATGGCATCCAAAAatacacagcccacctccactctGTAGGCAAGACCATCACAACGGCACATTTCTACCTGAGGAATATACAGCAGTTCCTCAAATACTTCCGGGAAACCCTGCCTGCCCAGTCTCACCTGACTGCGATGGATGTGGTGAGCATGCTGCGCACCGTCACAAAGTGCCTCACAGACACAACCAGGAACGTTGTCCTGCACCAGCTGGCAGTGAAAAGCCACAAGAAGGCCAGGATAATATCCTGCGAGGACCTGAAGCGGTGCCAGCAGGGGGCCAAACTGAGGATCCCAGAGCTGCTGGACGCCCTGGAGGAGAACCACACGCCGTCGCTGCGGTACCGTTTTTATGGCTACTTTGCGGCCTTCACAGCCTCCATTTACGGCTATCGCCCAGCGGTACTCAGTAACCTCCGGGTTAGCGAGGTTGAGGAGGCCGCAGAGGCGCACAAGCCTGGCGACGAGGGTTTTGTGATCTCGATCAGGGAACACAAGACTAACAAGTGGTTTGGGGCGGCGCAGATCTTCTTGGAGAACGATGAGTTTCACTGGCTGGTTCGGTGGCTGCAGCTGCGGGCGGCCAGCAGGCCACCCAACCAGCTGGTCTTCTTCACGGCTGGGAGGGGCCCATGCAAGAACTTCTTGCACCACCTGCAGGTAGCGTGGGTGGAGATGGGCCTTAAAGGGTCCCCCAACTTCACCGACCTGAGGACCCGCTGTGTCTGCTCATCCCAAGAACAACCTGCCTGCCGAGCAGCGGAAGATGGTGGCCACATTTATGTGCCTCAGCACGGCCACAGCTGACCGCTTCTACGCCCTCAGCCTGAACGTGGCCCAGGAGAGGGCGTTAATGGCGAGGCTGCAAAGTAGACCAGAGAAGGCCCTCAGGATGAGCCAGTACGGCAGGCTGATGGTGGTGCTGACTGCACTCGAGGCTCAACCCCCCCCCTGTCAAAGAAGATTTCAGAGAGGGCGACAAGGGCAGCGTATCGGGGGGCACAAAAAAGACTTGCAGCCCAGCAGCCCTAGACACACAGGCATACTCACTCACTTTTTATTAGATGGTCTATTTTAGTTaagattcattttgttttattaaatgttcCATTTTAGTAGATGTTaagattcattttgttttattaaatgtttcaCTTTAGTAGATGTTAAGATTAATTTtcttttagtgtgttttcaaatgttcaaTTTTGATATGTGTTTAATACAagttcctttttatttaaaatgacaaaactaTAATACTGAGCACGCTTAGCCTAAATATGAAGCCAGGAACACCAAATTGGTCAGGTATTCTCAACACAGGCCCACCTTTGAGTTTGAAAAGGTTCAAAGTATCTGGCTTTATTAAAATACATAGATATCCAGGGCAATACTTAACATAGAGTGAATGGGAACGTCATTTCTTTTAGGAACAGACTATGGAGCTGGAACCAGGTTGTTTAGTAGAGCACTCTCGACTATACAACGTATCCAAATTTCATAGTCATAACtcatttcaacttttttttaatggggACCAGAAAACCTCACATGTTAATAacttcatttttcaaaactgaaATGAGTATGGCATTTGTCATACTTATGACAGGGAACTCAGGGTCCCCAGTGTCCCTGCTGCCATGGCAGTTTATTGTCCAAAGGTCAGTAGTAAACTAGCCCCATGATAAGATTTGTAAATGATCTTTGATCATGAAAGTTCAGTATGTGGTCACGCTGGCCTAGACTGGTCGCACACCCTGTGTGAATCTCGTTCAGATtggagataataataataataataataataataaattgaatttatatagcgcttttcatagactcaaagtcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92686 lncRNA downstream 540 42780818 ~ 42819334 (-) True G69184
XR_005639461.1 lncRNA downstream 48441 42768404 ~ 42771433 (-) True LOC120560255
XR_005639462.1 lncRNA downstream 50560 42768403 ~ 42769314 (-) False LOC120560255
TU92694 lncRNA downstream 115882 42696173 ~ 42703992 (-) True G69189
TU92668 lncRNA downstream 163952 42653635 ~ 42655922 (-) True G69175
XR_005639465.1 lncRNA upstream 147821 42970466 ~ 42971625 (-) True LOC120560258
TU92740 lncRNA upstream 148481 42971126 ~ 43014065 (-) True G69229
TU92776 lncRNA upstream 184214 43006859 ~ 43096619 (-) True G69250
TU92780 lncRNA upstream 198487 43021132 ~ 43022838 (-) True G69254
TU92785 lncRNA upstream 214902 43037547 ~ 43038477 (-) True G69258
XM_039804064.1 mRNA downstream 10285 42663363 ~ 42809589 (-) True LOC120561114
XM_039802513.1 mRNA downstream 157855 42658356 ~ 42662019 (-) True LOC120560234
XM_039802515.1 mRNA downstream 158351 42658356 ~ 42661523 (-) False LOC120560234
XM_039802434.1 mRNA downstream 548663 42262425 ~ 42271211 (-) True LOC120560191
XM_039802496.1 mRNA downstream 562990 42241736 ~ 42256884 (-) True hpdb
XM_039802439.1 mRNA upstream 51252 42873897 ~ 42958273 (-) False LOC120560194
XM_039802438.1 mRNA upstream 51252 42873897 ~ 42958273 (-) True LOC120560194
XM_039802527.1 mRNA upstream 179852 43002497 ~ 43025050 (-) True chek2
XM_039804068.1 mRNA upstream 253585 43076230 ~ 43099165 (-) True card9
XM_039802523.1 mRNA upstream 282697 43105342 ~ 43141553 (-) True snapc4
TU92678 other downstream 10252 42772991 ~ 42809622 (-) False LOC120561114
TU92624 other downstream 283799 42535267 ~ 42536075 (-) False G69140
TU92567 other downstream 687293 42130611 ~ 42132581 (-) True G69105
TU92299 other downstream 703613 42107630 ~ 42116261 (-) True G68921
TU92564 other downstream 705715 42112792 ~ 42114159 (-) False G69104
TU92739 other upstream 147439 42970084 ~ 43014065 (-) False G69229
TU92741 other upstream 147439 42970084 ~ 43014065 (-) False G69229
TU92743 other upstream 179610 43002255 ~ 43003347 (-) False chek2
TU92737 other upstream 181941 43004586 ~ 43018251 (-) False chek2
TU92794 other upstream 255207 43077852 ~ 43088827 (-) False card9

Expression Profile