RNA id: XM_039802523.1


Basic Information

Item Value
RNA id XM_039802523.1
length 6535
RNA type mRNA
GC content 0.57
exon number 26
gene id snapc4
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 43105342 ~ 43141553 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATAAAGAGCGGACCCGTGCGGTTAGCATGTCCAGTATAGTAAAGGCGGTTAGTTTTGAATGCTCGTGTGTTTCTCATCTTAAACTACAAACCGGTAGTTCCGCTGGAACCCCTTCATGTGTTTATAAACTACAGAAAGAAACGTTTAAACCGGAACTCCGTGAGAAAGGTGACACCCCGCGCACCGCCTGCTGGGTAATATGTTAACGACAGAGCTACGTTGATTGGAGCTCTGCAGCGCGTGGAGGCAGAAAGTCAAAAAAGACCCAAAAAGCAGACCGGACGACAAGTTTAGATGAAGACTCGGCGGTGAAGGAGAAGCTACGGAAGCTGCTGAAGacatgtctgtctctctgtcagcagagagagacaggatcCAGCGACAGGTGGAGGAGCTGGAACGGAGTCTTTCTGCAACAAATGCTGAACTGGAGCTGCTGAGCAGTGAGACagATGATAAatcagatgatgatgatgccacggatgaggaggaggaggaggagagacagtctgcaGCAGGTCTGCTGGCTCAGAGAGAGAAGATCCAAAAAGAGATCCAGAACCTGGAGAACGCCCTGGGACCCATCTGTGTGTCAGATGATGACAGCAGCAGTGAGGAGaGTGAGCTGGGTCTACCTCCATCGGTAGACTCGTGTCTACAGATGAATCTGGTCTATCAGCAGGTCGTTAAAGAGACTCTGGACCAGCTGGAGGCTCTGCTGACTCAGAACCACAAGCACCAGAAGGAACTGCTGTCTCAGCTGTCTGGACCAATGAAAGGTTACACCAGGGAACAGTCCGCCCCCTCCTCCTGccagcagccaatcagcatgTTCTTAGGACGCTTCCTCAAACCGTACTTCAAGGACAAACTGACAGGActgggtCCTCCAGCCAATCAGGAGGCGAAGGAGAAGGCCGTCAGGATGACCGGCAGTCTGGACGACAGGAAACTGAGAGTCAGACGCTgGGAGAGCTGGCAGAAGACTCTGTTGATCCACTCAGTAACCAGTGACAGTCTGAGGAAACTCATCCAACCCAAACTCTCCAAGTTGGACTACCTGAGTCAGAAGCTGTCGTCtgctgcagagacagacaggcagcagcTCCGAGAGCAGATAGACAGGCTGGAGAGAGACATCGACCTGCTCAGagagaagacagaggcGGAGCTGATCGGGGATCAATACGATGAACACGATTGGCAGAAAATCTCTAATGTTGATGTAAGTAGagaatcaaccaatcacagagtCTTCTCTTGATTACATCAGCTGGTGTGTAAGACCAGCTGGACtaaatgtgaagtatgtCAGCTCAGGGAGCTCAGCAGGACCCACGGAGAGAGGCACTGGGACCACATCGCTGCACAGCTGGGGacgGGGAGGACAGCCTTCATGTGTCTGCAGACCTTCCAGCGGTTCGTGTCTGACTCGTTGAAGCGAGGCAGCTGGACTCCGGCCGAAGACGAGACGCTCAGAGAACTCGTGGACCAGATGAGGATCGGAAACTTCATCCCCTACACGCAGAtaagTTACTTCATGGAGGGTCGGGACCCGTCTCAGCTGATCTACAGGTGGAACCAGGTTTTGGATCCGAGCCTTAAGAAAGGATTCTGGACCAAACAGGAGGACGAGctgctgcTGAAGGCCGTGTCTCGTTACGGAGAGAAGGACTGGTGGAAGATCCGCTTCGAGGTTCCTGGACGCACTGACAGCGGCTGCAGAGACAGgtATTATGACTGTTTAAAGGCGGGGACAAAGAAAGGACCGTTTGACCAACAGGAGAAAGACCTGCTGAGACAGCTGGTGGAAAAACACGGAGTcggtcgCTGGGCGAAGATCGCTGCAGAGATTCCTGATCGTTACGATGCTCAGTGTCTGAGAGAGTGGAGGAAACTGAGCAAGcctccaccacctccacctGCTCAGAAAGATAAAAGAGCTCCAAAGAGCCGCAgagtgaagaggaggaggaaggctgGGCCGGCCAGGAGGAGAATCCGGAGACGCCTGATGAAACTGAAGGTGGAGGAGCTCAGCGTGGAGGAGAGCAGCGAGGACGAGACCTTGGTGATCGAGTACATGGACAGTgatgaagaggagaagaagaagaagcaaaagaaggaggaggaggaggttcaGATcagtgaggaggaagaggaggaggaagaagagtacATCTTACCGCCCATGCAGGAGTGGATCCCAGTGGAAGAAGCTCAAACTAACAGCTCCCTGAGCTTTCGACCGGCCGAGTTACCTTCCTCCGCCGTCGCTGACAACCCCGTACGTGTGCGCTCGACCATCGTGGGCCAATACGGTCGCTCGGTAATCATCGGGCCGCGTCCCAGACAGCTGCAGTGGGAGGGTCACCACGGCAACAACGCCACGACGATGATGATGGTGACTCGGAGCCAGCTCCAAACGCACCTGCAGCGCCAGGCGCAAACCTCCTCCGACAGCAGCCAGCACCCCGGCCCCCGAGGGAAGGTCCAGATCGACAAAAACAACCCGCTGGGTCGAGTGATGGACAGACGTCTGGGATGCAGGCTGCAGGCTGCCGTCACACCGTGGATCGGTTACCTGCTGATCCACGCCGAGGgcgagaagaagaagaagagacgcAAAGCGACGGCGGCAGACGTCCTGAGGCAGCGAGCGGAGAAGAGGGAGGAGCGTCTCTCCACTCCGTTCTTCCTGCTCCTTCTGCAGAGCCAGAACGTGGACGCCTTGGGCTGCAAGGAGATGATCGAGCAGCGCAGGAAGAAGGTGGCGTCCACAGTGGCGAGGCCACGCCCGCGGCCACCGGTGGCGTCCACCGGCGGGACGAAGAGTGTTGCAGAAATACTGTATCAGAAAACCAtgaaggaggagcagcaggatcTGGACCTGCAGCACCAGCTGATCCTGAGTCAGCTGCAgaccctgcagcagcagcagcagcagcagagagccaaACAGAACCATCTGCTGCTCCAACAGCGTGCACGACAGCAGCGACCTGCGCTCCCCTCTCAGAATCAGCCCGGCTTTCTTCTTCAGATGCCTCCTCAGATGAATCCTAGGATGTTGTTTCGTCAACCTGTCTTCATTCCTGTCACGCGACCTTGCGCTCCCCCCATCCAGTTCATGTCTCCCTCTGCCCTGAACAGACCTTCACCTGTGACGGTCGTCACATCTCCGTATCCTGCCCGTCCTGCGTCTCACCCACTGGGTGTCCCTTCTTCTGTCACTGTGGTCCCAATGCGCCTGAATGCCACATCCACTTCCCCTGTCTCTTTTCGCCAACAAGCTGTACCTTTGACTCAAAACCCTGTCCCTGCTTCGGCCCCTTACCTTGCTCAGCAGCATGTTTCTGTTGCTTCTACGCTGCCCGGTCAGCACGTTGCTCCCTCCGAATCCACTGCCTCCGTCGCCTGCCCCAGTCCGTCTAGCTCCATCTCTAGTTCATCCAAACGGGGGAGGAAAAAGGTGGCAGAGGATCAAGTGGCTGGTAGCAGCAGTCAGAGTGGGGAGGATATGAGCGGGGCAAGCGATTGTGTGGACGGGGCAAAGGACAGTGCGATTAAAGATGGAAGGAGGATTCGGAAGCCGAGCCAGAAGGCCAAAGCTCTGCAAGAAGCCATCGTAGCCAGGGCTGAAGCCATCAAGAAAGCTGCTTCATCTCCGCGAAAGAAAGCTCAGCTCCAGAACACAAACTCTCCTCCGACAGACATTCCTGTTCCCTCCCAAACAGTCCTTCCTGTTCCCTCCCAAACAGTCATCCCTGTTCCCTCCCAAACAGTCCTTCCTGTTCCCTCCCAAACAGTCCTTCCTGTTCCCTCCCAAACAGTCCTTCCTGTTCCCTCCCAAACAGTCATCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTTCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTTCCTGTTCCCTCCCAAACAGTCCTTCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTTCCTGTTCCCTCCCAAACAGTCCTTCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCCAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCAAACTGTTCCCTCCCAAACAGTCCAAACTGTCCTTCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCCCCCAAATGTCCTTCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTCCCTGTTCCCTCCCAAACAGTCCTTCCTGTTCCCTCCCAAACAGCCCTCCCTGTTCCTTCAAAAACAGTAGTCCCTGTGAACTTGTCCCGGTTGCCCCTGAATGCCACAGCAGCCTGCTCTGATAGGAGTGTGTCCTCAACTCATAACCTCAGTTTAGCACCGCCTGCTTCCTCCACAATAAGCCTACTTCCTTCTTTCCCTAAAGAGCATGACTACACCTTTATAAATCCTGGCCCTACCCCGAGTCAACGTAGCTCAAAGTCCATTCAACCGAGCCCTGACTCCGGCTCCAACGAGCCTCCCCAGAGGGTGGAGGAGCAGCCGTGCGTTTCAAGCAGTCAAGACGACCAATGTGAGAGCGAGACAGGTGCAGGTGGGAGCCAGAAAGGAAAGAGAACCCGGAAACCGACTCAGAGGGTCAAAGATCTTCAGGAAGCCACTCAGGCGAAGGTTGAAGCCAAGAAGAAGAAAGCTTTGAAGCCTCCTCGGGAGAAGCGCCCTCCTAAGTCTCGCGCTAAAAAGAAAGTTATGGTGAAGAACGAGCCGGCGATTCAACCCCGCGGCTTCCATTTACTTCCCAATCAGTCGATGTGGGTCATGACTCCCGGGGGTCTGGTCCAGCTGACAGAAGGCCCTCAGCCAGGCCTGCAGCTGGCGTTGCTACCAAACGCTCGCCTCCAAGCTCCACACGGGAATGTTTTGAACCATCCGGTCACGCCCGCTCTGCGATTCACCGCCGGCAGCCCGCAGTTTACCGCACCCCAACCCACCACTGCTGTATCTGTCCCCTTAAACCGCCCCTTTATGAATCAGCCACACCTTCCTGCTGGGCCCACCTCTGCATTCAGGCCCAACCCACCAGCCTTCATCCTGCAACCAGTCTCAAACCCCCGtctccccctgcctccccctAAACTCTTCCTGCCGTATAAAGGCGCAGTTACAGCGGACCCGAGAGCGCCCCCTCCCCTCAGGCGGGAGGCGCTGCAGTTCGACCCCTCCCTGATGTTCCTTGAGCCCAAGGACGCGGTGCAGGATTGGCTGAGCGGTCAGGGAGGCGTGGTGGTACCTGGATTGAGCGTGGCTCTTCCCTACCTGCCGCCCTTCGTCAGCAGTCTGAGCACGCTCAGTGCGCTGCTTCGGGCCAAGAAGTCTCTGACCAAATCATTCCTGAAGCTGCTGAGTCAGCGCTCCCAACCCCGACGCCCCAACAGACCCGGCAGCTGCACCCAGAGGACATCCAGACCGTCTCCAGACCTGCCGGACTCCACCTCTGACCTCCAACCAGCCGAGGACTCTCCAGCGACAGCGTCCATTAGCTCCGCCCCCCCgcaggaaggggaggaggcagcGGCGTCCGTTAGCTCCGCCCCCCCGCAGGAGGACATGGACCCGGCGGAGGTCGTGGCGGTGGCGCGGCTGCTGGTGGCGGAGCGGTTCTCCAGTAACCCCGCCTACCAGCTGCTGAAGGCCCGCTTCCTGTCCTGCTTCACCGTCCCCGCCCTCCTGGCCGCCATGCAGCCAATCGGAGAGAAGACTGCCGGCGaggacgaggaagaggaggacgaggTGGACGTGAAGACGctcaaagagagaggaagacgcCGGAGAGCAGAGAGATCTTTGCTGCTGTGTGACGGGTCCGGAGCCTCAGCCAATCACTTCTCAGGAATCAACAACCGCACACCGGACCAGACGGTCTCCGTCCAATGAGAGCGCAGATCTCATCCTCGTTAAACCTGTTGGAGGAGTTCAAACAAGACTGTTGGTCTTAAAGAAATGGTTCACTTCTGTTTTGGTCTCAGAGCTCAAATCTGAGAGTAAGGCTGCATCTCCACTGCtccgttcccccctctcattccccctgctctggtgtttccccctctcattccccctgctctggtgtttccccctctcattccccctgctctggtgt

Function

GO: NA

KEGG:

id description
K09453 SNAPC4; snRNA-activating protein complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92772 lncRNA downstream 590 43103960 ~ 43104752 (-) True G69246
TU92771 lncRNA downstream 823 43103996 ~ 43104519 (-) False G69246
TU92776 lncRNA downstream 8723 43006859 ~ 43096619 (-) True G69250
TU92796 lncRNA downstream 13442 43089641 ~ 43091900 (-) True G69266
TU92793 lncRNA downstream 28360 43076255 ~ 43076982 (-) False card9
TU92802 lncRNA upstream 10309 43151862 ~ 43152875 (-) False G69271
TU92804 lncRNA upstream 10309 43151862 ~ 43153110 (-) False G69271
TU92805 lncRNA upstream 10309 43151862 ~ 43152875 (-) False G69271
TU92806 lncRNA upstream 10309 43151862 ~ 43153110 (-) True G69271
TU92777 lncRNA upstream 24568 43166121 ~ 43194392 (-) True G69251
XM_039804068.1 mRNA downstream 6177 43076230 ~ 43099165 (-) True card9
XM_039802527.1 mRNA downstream 80292 43002497 ~ 43025050 (-) True chek2
XM_039802439.1 mRNA downstream 147069 42873897 ~ 42958273 (-) False LOC120560194
XM_039802438.1 mRNA downstream 147069 42873897 ~ 42958273 (-) True LOC120560194
XM_039804065.1 mRNA downstream 251000 42822405 ~ 42854342 (-) True LOC120561115
XM_039802524.1 mRNA upstream 1835 43143388 ~ 43178989 (-) True pomt1
XM_039804069.1 mRNA upstream 81924 43223477 ~ 43251312 (-) True LOC120561119
XM_039804070.1 mRNA upstream 160066 43301619 ~ 43304446 (-) True LOC120561120
XM_039804071.1 mRNA upstream 166795 43308348 ~ 43310847 (-) True LOC120561121
XM_039802458.1 mRNA upstream 339408 43480961 ~ 43528118 (-) True LOC120560199
TU92794 other downstream 16515 43077852 ~ 43088827 (-) False card9
TU92737 other downstream 87091 43004586 ~ 43018251 (-) False chek2
TU92739 other downstream 91277 42970084 ~ 43014065 (-) False G69229
TU92741 other downstream 91277 42970084 ~ 43014065 (-) False G69229
TU92743 other downstream 101995 43002255 ~ 43003347 (-) False chek2
TU92756 other upstream 31612 43173165 ~ 43178971 (-) False pomt1
TU92775 other upstream 69466 43211019 ~ 43218894 (-) True G69249
TU92812 other upstream 109205 43250758 ~ 43251295 (-) False LOC120561119
TU92928 other upstream 230214 43371767 ~ 43380599 (-) True G69356
TU92966 other upstream 399690 43541243 ~ 43546558 (-) False phf19

Expression Profile