RNA id: TCONS_00075425


Basic Information

Item Value
RNA id TCONS_00075425
length 946
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_038029
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 36956993 ~ 36959661 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGAGAAAGCAAAAGAACATGGTAATTTACGCCACGGTCATATGCCACACTGAAATCCCCTGCTGTCCCTGCAGAGGTTTGCCACCCAGAACCAACATCAAGTCCGGCATGTGGAGGAACATCTCATCCTCGCTTTCCTCCGCCAGCTCACAACTTTTCCTCTTCTCACCAACAGCCTCCTGATTCTCAAAGATAATTCAGCCTGTTGTAAAGCCAACACACATGGACTTATATTTTCATTCTTTCttgtctttaataaaaacaaatgcattaaaatatgtaCTTACAAAATTAGTCCACAGAATTAGGCCATTAAGATTAAGAAGCAGTAAatcgtggcataggcagtataggcaaatgcgaTGAAGGGCGcagtacatccaggggggcgccagaaatgggGGAAGAAAAAAGTGTAACTTCCACTATTCTAAAAACTAGTTGGTATTAAGACTTCAGAAAAGAATAAGCTCACATTCATTTAACTTTGACTAAGACTAATAATTAGACTCTACCTGCAACACAGAGTTAGTTTTTTTTGATGGGTCAACAAGCTTAACATGTTAAAACGTCCCAAACTGTCTGGTGCACAGGGGAGGAAAAAATTAAAGGAAGAGGAGGAAAAATGTGAGAAGAACAGAGGTAATGTTCCGATAAAGAtgaatattttgattattttgctGAAGGATGATTGATAACACCATTAACAATTAGCATGACACATGCCTGTCAACCCGATTCTCCTGTATTCTACCATTCTATCCCGCTATTATCCCGTTTAAGAATTTAAATGGACTAATATTAAGCCAATATTGCTGCATGACTGACTTGAAGCTATTAACTTCTCAAACTTGGGCCAATCTCATGATTATTCCTTCCCCACACAGTAGCCCACAATTAAAACTGAAAATGGACTAAAATGTGGaagtattttcagttttttg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075424 lncRNA downstream 16243 36937446 ~ 36940750 (-) False XLOC_038028
TCONS_00075423 lncRNA downstream 16514 36926826 ~ 36940479 (-) False XLOC_038028
TCONS_00074601 lncRNA downstream 18487 36937694 ~ 36938506 (-) True XLOC_038028
TCONS_00075422 lncRNA downstream 26014 36926826 ~ 36930979 (-) False XLOC_038028
TCONS_00075006 lncRNA downstream 210174 36745535 ~ 36746819 (-) True XLOC_038022
TCONS_00075007 lncRNA upstream 56068 37015729 ~ 37020471 (-) True XLOC_038030
TCONS_00075426 lncRNA upstream 158523 37118184 ~ 37137256 (-) True XLOC_038031
TCONS_00074612 lncRNA upstream 857605 37817266 ~ 37820212 (-) True XLOC_038034
TCONS_00075008 lncRNA upstream 1110423 38070084 ~ 38071916 (-) True XLOC_038037
TCONS_00075427 lncRNA upstream 1391920 38351581 ~ 38352885 (-) True XLOC_038040
TCONS_00074600 mRNA downstream 32605 36896257 ~ 36924388 (-) True XLOC_038027
TCONS_00074594 mRNA downstream 1081942 35872698 ~ 35875051 (-) True XLOC_038018
TCONS_00074591 mRNA downstream 1323166 35631440 ~ 35633827 (-) False XLOC_038015
TCONS_00074589 mRNA downstream 1399596 35170335 ~ 35557397 (-) False XLOC_038014
TCONS_00074602 mRNA upstream 381579 37341240 ~ 37366881 (-) False XLOC_038032
TCONS_00074604 mRNA upstream 381766 37341427 ~ 37367477 (-) False XLOC_038032
TCONS_00074603 mRNA upstream 381766 37341427 ~ 37367477 (-) True XLOC_038032
TCONS_00074605 mRNA upstream 521773 37481434 ~ 37613792 (-) False XLOC_038033
TCONS_00074607 mRNA upstream 521773 37481434 ~ 37748513 (-) False XLOC_038033
TCONS_00074599 other downstream 174328 36782547 ~ 36782665 (-) True XLOC_038026
TCONS_00074598 other downstream 186330 36770357 ~ 36770663 (-) True XLOC_038025
TCONS_00074597 other downstream 190965 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074596 other downstream 195699 36760889 ~ 36761294 (-) True XLOC_038023
TCONS_00074595 other downstream 836467 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074610 other upstream 677296 37636957 ~ 37749919 (-) False XLOC_038033
TCONS_00074611 other upstream 787926 37747587 ~ 37749919 (-) True XLOC_038033
TCONS_00074619 other upstream 1244746 38204407 ~ 38204528 (-) True XLOC_038039
TCONS_00074623 other upstream 1509785 38469446 ~ 38469566 (-) True XLOC_038043
TCONS_00074627 other upstream 2270865 39230526 ~ 39255210 (-) False XLOC_038048

Expression Profile

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