RNA id: TCONS_00074611


Basic Information

Item Value
RNA id TCONS_00074611
length 801
RNA type processed_transcript
GC content 0.39
exon number 2
gene id XLOC_038033
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 37481434 ~ 37749973 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCACAGAAAAGGGATACTGCACAGGAGAACTACACCAAGCGGAGATTGCGGTTTATGCGTTGCGTTTTACGTACGACAGATTTGACTTCAGAGGAAGAACATCAGAAGATGGCAGATAATACACAAACGCCTGAGCTAGAGAGGGAAAATCACCTGTTGGCCTGGCACAGTTTAAGTCAGCGGCGCTAAATCCTGGAAATCTGCCTTCCCGTGGAGCTTTAACTGCAATCAAACatacctgaagcagctaatcaggGCCCTTTGGTTCATCTGAGTTTAACGTCAACAAGTCTGTTCAAACTCTGAAAAGCAAACGATTGAGTCGGCCAAATCTGTTCCAATCTTTACATTTCACATTGTTGGGTAAGTAGGGAAAATTATAGATGCATTTGATGTTCTTTTAAGCTGCAATCAAAGAGCTTTAATAGATCAAACTCACAAACTCTCCCAGGACAACATCAAGGTTCGCTGTTAGGCTGATCATCCTGTGGAGCACCTTCATGTATCCCTCAGTACTTTATAAAAAAGTGAAGTGGATTTAAAGTTCATAATTATGAATGTGTTGTCCTTATGTTTGCTTATTCACATGCTTCAAAACAATGatgaaattcaaattaaaatgtacagATTCAAAACTTAGCCTCTTAATTCCACCATAAAGGATCCGTGATTTTCATTACATCACTCTGCATGTTAGATTTTCCTTCCATTCAAATGCAATTACATAAATAGACACCAAAGCTGCTGCTGAAACTGGTTTTCTATATGATGAATGGCAtgttttttcaatataaaaagg

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0060385 axonogenesis involved in innervation biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0050975 sensory perception of touch biological_process
GO:0048675 axon extension biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000132678

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075426 lncRNA downstream 610331 37118184 ~ 37137256 (-) True XLOC_038031
TCONS_00075007 lncRNA downstream 727116 37015729 ~ 37020471 (-) True XLOC_038030
TCONS_00075425 lncRNA downstream 787926 36956993 ~ 36959661 (-) True XLOC_038029
TCONS_00075424 lncRNA downstream 806837 36937446 ~ 36940750 (-) False XLOC_038028
TCONS_00074612 lncRNA upstream 67347 37817266 ~ 37820212 (-) True XLOC_038034
TCONS_00075008 lncRNA upstream 320165 38070084 ~ 38071916 (-) True XLOC_038037
TCONS_00075427 lncRNA upstream 601662 38351581 ~ 38352885 (-) True XLOC_038040
TCONS_00075428 lncRNA upstream 808720 38558639 ~ 38559750 (-) False XLOC_038044
TCONS_00075429 lncRNA upstream 808720 38558639 ~ 38560263 (-) True XLOC_038044
TCONS_00074609 mRNA downstream 110408 37493438 ~ 37637179 (-) False XLOC_038033
TCONS_00074605 mRNA downstream 133795 37481434 ~ 37613792 (-) False XLOC_038033
TCONS_00074604 mRNA downstream 380110 37341427 ~ 37367477 (-) False XLOC_038032
TCONS_00074603 mRNA downstream 380110 37341427 ~ 37367477 (-) True XLOC_038032
TCONS_00074602 mRNA downstream 380706 37341240 ~ 37366881 (-) False XLOC_038032
TCONS_00074613 mRNA upstream 122658 37872577 ~ 38021997 (-) False XLOC_038035
TCONS_00074614 mRNA upstream 122803 37872722 ~ 38021889 (-) True XLOC_038035
TCONS_00074615 mRNA upstream 279556 38029475 ~ 38042939 (-) False XLOC_038036
TCONS_00074616 mRNA upstream 280645 38030564 ~ 38036984 (-) False XLOC_038036
TCONS_00074617 mRNA upstream 283015 38032934 ~ 38042823 (-) True XLOC_038036
TCONS_00074599 other downstream 964922 36782547 ~ 36782665 (-) True XLOC_038026
TCONS_00074598 other downstream 976924 36770357 ~ 36770663 (-) True XLOC_038025
TCONS_00074597 other downstream 981559 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074596 other downstream 986293 36760889 ~ 36761294 (-) True XLOC_038023
TCONS_00074595 other downstream 1627061 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074619 other upstream 454488 38204407 ~ 38204528 (-) True XLOC_038039
TCONS_00074623 other upstream 719527 38469446 ~ 38469566 (-) True XLOC_038043
TCONS_00074627 other upstream 1480607 39230526 ~ 39255210 (-) False XLOC_038048
TCONS_00074636 other upstream 2331605 40081524 ~ 40350169 (-) True XLOC_038052
TCONS_00074637 other upstream 2635211 40385130 ~ 40385247 (-) True XLOC_038053

Expression Profile

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