RNA id: TCONS_00075008


Basic Information

Item Value
RNA id TCONS_00075008
length 636
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_038037
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38070084 ~ 38071916 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gccaagttactttaactgtcataatGTTTTAACCATACcgcaaccaacaccagcagtcacagaaccacaataAGAGGTCACATCGAAACACTGCCCCCTCTCAACCACACACTGCACTTTTTACTTTCCAAATGGGGTTTCGtcctacacagcaaattcatctgagttaaattcttggtgttgaagcatttcagagtaaagtgttgacgttaaagagttagattttgataaatgaatataataagagttagaattgattttattcagtgctaaatcaaggagttatcttttcaacacttggtggtgttatttccaacatccgggaattcatgcagccccagtcactgtagaattttccagacgccattttccatctgaggtttagaacagcaactgcaaactagcgagggaatccccggagcagcctaacgttagcctactctgcccggatgctaacggcaacacaggacggtttccataagctctggagagtttctaaaacatatatgccacagttctctatacaataacacaagaccctgtgacggtggctgattagagacggatggtgtatttccagagttggtgaaatgaccaagcacaccttcttggtcatatgtggtgataataatgaag

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074612 lncRNA downstream 249872 37817266 ~ 37820212 (-) True XLOC_038034
TCONS_00075426 lncRNA downstream 932828 37118184 ~ 37137256 (-) True XLOC_038031
TCONS_00075007 lncRNA downstream 1049613 37015729 ~ 37020471 (-) True XLOC_038030
TCONS_00075425 lncRNA downstream 1110423 36956993 ~ 36959661 (-) True XLOC_038029
TCONS_00075424 lncRNA downstream 1129334 36937446 ~ 36940750 (-) False XLOC_038028
TCONS_00075427 lncRNA upstream 279665 38351581 ~ 38352885 (-) True XLOC_038040
TCONS_00075428 lncRNA upstream 486723 38558639 ~ 38559750 (-) False XLOC_038044
TCONS_00075429 lncRNA upstream 486723 38558639 ~ 38560263 (-) True XLOC_038044
TCONS_00075430 lncRNA upstream 636547 38708463 ~ 38709221 (-) True XLOC_038046
TCONS_00075431 lncRNA upstream 1158610 39230526 ~ 39282273 (-) True XLOC_038048
TCONS_00074615 mRNA downstream 27145 38029475 ~ 38042939 (-) False XLOC_038036
TCONS_00074617 mRNA downstream 27261 38032934 ~ 38042823 (-) True XLOC_038036
TCONS_00074616 mRNA downstream 33100 38030564 ~ 38036984 (-) False XLOC_038036
TCONS_00074613 mRNA downstream 48087 37872577 ~ 38021997 (-) False XLOC_038035
TCONS_00074614 mRNA downstream 48195 37872722 ~ 38021889 (-) True XLOC_038035
TCONS_00074618 mRNA upstream 68995 38140911 ~ 38156894 (-) True XLOC_038038
TCONS_00074620 mRNA upstream 281536 38353452 ~ 38368138 (-) True XLOC_038041
TCONS_00074621 mRNA upstream 313645 38385561 ~ 38398789 (-) False XLOC_038042
TCONS_00074622 mRNA upstream 317926 38389842 ~ 38399432 (-) True XLOC_038042
TCONS_00074624 mRNA upstream 492984 38564900 ~ 38587275 (-) False XLOC_038045
TCONS_00074610 other downstream 320165 37636957 ~ 37749919 (-) False XLOC_038033
TCONS_00074611 other downstream 320165 37747587 ~ 37749919 (-) True XLOC_038033
TCONS_00074599 other downstream 1287419 36782547 ~ 36782665 (-) True XLOC_038026
TCONS_00074598 other downstream 1299421 36770357 ~ 36770663 (-) True XLOC_038025
TCONS_00074597 other downstream 1304056 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074619 other upstream 132491 38204407 ~ 38204528 (-) True XLOC_038039
TCONS_00074623 other upstream 397530 38469446 ~ 38469566 (-) True XLOC_038043
TCONS_00074627 other upstream 1158610 39230526 ~ 39255210 (-) False XLOC_038048
TCONS_00074636 other upstream 2009608 40081524 ~ 40350169 (-) True XLOC_038052
TCONS_00074637 other upstream 2313214 40385130 ~ 40385247 (-) True XLOC_038053

Expression Profile

//