RNA id: TCONS_00075428


Basic Information

Item Value
RNA id TCONS_00075428
length 638
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_038044
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38558639 ~ 38560263 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCacattcactcaaaaatgaacgtTCTGGagtcatttatttacctttaggCAGTTCCAATCTTCTAGGAAAAAGGGTTGCTCTTTTCCTTTATAAGCAAACTACATATGTTTCACAGACTTCTAAAAACCCACAAGATGGTTTCAATAGCCTGCTGAAAACCAGACTACACTAGTTTGGTGGTCTTAGCTAGTCTTCCACTGTGAAAGTGGTGAAAACTTTTCTAAAAGCAGGTTGGTGCCTTTTTCTAACCATGTTTGGAGACCAACCATGATCAAGCAAAACAGCCTTGAAAAATACCAGTAGCTGgctcccattgacttccataatattttatttcctATATATTATGCAAAtgaatgggtgccagcaaccagcacttttcaaaatatcttcttttgtgttcaatggaagtGTTGAAAAACCAGCCTAAACTAGTTTGGTGGTCTTGGCTTGTCTTCCAGTCCGCCCAGATGAAAAGTGTTGAAAACTTCTTTAAAACCAGGCTGGGTTTTTGGCTGAAAAGGTTTGGAGACCAACTATGATCAAGTAAAACAGGCTGGTTttagattaatattatttttcagcagggtaaatcaaaacttttaaacctttatgagtttctttcttctgttgaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075427 lncRNA downstream 205754 38351581 ~ 38352885 (-) True XLOC_038040
TCONS_00075008 lncRNA downstream 486723 38070084 ~ 38071916 (-) True XLOC_038037
TCONS_00074612 lncRNA downstream 738427 37817266 ~ 37820212 (-) True XLOC_038034
TCONS_00075426 lncRNA downstream 1421383 37118184 ~ 37137256 (-) True XLOC_038031
TCONS_00075007 lncRNA downstream 1538168 37015729 ~ 37020471 (-) True XLOC_038030
TCONS_00075430 lncRNA upstream 148713 38708463 ~ 38709221 (-) True XLOC_038046
TCONS_00075431 lncRNA upstream 670776 39230526 ~ 39282273 (-) True XLOC_038048
TCONS_00075432 lncRNA upstream 1350946 39910696 ~ 39915313 (-) False XLOC_038050
TCONS_00075009 lncRNA upstream 1352425 39912175 ~ 39915291 (-) False XLOC_038050
TCONS_00075010 lncRNA upstream 1352425 39912175 ~ 39939616 (-) True XLOC_038050
TCONS_00074622 mRNA downstream 159207 38389842 ~ 38399432 (-) True XLOC_038042
TCONS_00074621 mRNA downstream 159850 38385561 ~ 38398789 (-) False XLOC_038042
TCONS_00074620 mRNA downstream 190501 38353452 ~ 38368138 (-) True XLOC_038041
TCONS_00074618 mRNA downstream 401745 38140911 ~ 38156894 (-) True XLOC_038038
TCONS_00074615 mRNA downstream 515700 38029475 ~ 38042939 (-) False XLOC_038036
TCONS_00074624 mRNA upstream 5150 38564900 ~ 38587275 (-) False XLOC_038045
TCONS_00074625 mRNA upstream 5289 38565039 ~ 38579758 (-) True XLOC_038045
TCONS_00074626 mRNA upstream 434482 38994232 ~ 39005317 (-) True XLOC_038047
TCONS_00074628 mRNA upstream 754194 39313944 ~ 39624173 (-) False XLOC_038049
TCONS_00074629 mRNA upstream 763377 39323127 ~ 39624173 (-) False XLOC_038049
TCONS_00074623 other downstream 89073 38469446 ~ 38469566 (-) True XLOC_038043
TCONS_00074619 other downstream 354111 38204407 ~ 38204528 (-) True XLOC_038039
TCONS_00074610 other downstream 808720 37636957 ~ 37749919 (-) False XLOC_038033
TCONS_00074611 other downstream 808720 37747587 ~ 37749919 (-) True XLOC_038033
TCONS_00074599 other downstream 1775974 36782547 ~ 36782665 (-) True XLOC_038026
TCONS_00074627 other upstream 670776 39230526 ~ 39255210 (-) False XLOC_038048
TCONS_00074636 other upstream 1521774 40081524 ~ 40350169 (-) True XLOC_038052
TCONS_00074637 other upstream 1825380 40385130 ~ 40385247 (-) True XLOC_038053
TCONS_00074639 other upstream 1949779 40509529 ~ 40509643 (-) True XLOC_038055
TCONS_00074649 other upstream 2383369 40943119 ~ 40953573 (-) False XLOC_038063

Expression Profile

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