RNA id: XM_039803698.1


Basic Information

Item Value
RNA id XM_039803698.1
length 5803
RNA type mRNA
GC content 0.46
exon number 3
gene id ercc6l
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15202139 ~ 15211704 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGCTGAAAACAGTTGGCGGGTGGAAAACTACAGGTTCAAATCGAATACAACGAGACAAACTTGTGTCAGTGGATTTTCCATCAGTTCGCGGTGTGTTTAACTGCTTGTAATCACCGAAAATCTCGTTTATTCACCGGCGGGTTTAGTTTGTTTACGTGACGGTGAAAAGTGTCGGGATGGATGTCTCTCAAGAAGATGGTGAAGTTGCGGAGATTTCAAAGAAACTGGAAAAGTCTTTGTCCATGGATACGGATGACAACATGGAAGCCTACCACAGattCATTCAAGATGGTAAAGGTGTTGCCAAACAAGGGGACCTGAAAGGGGCTCTGAAGCTCTTCAAACTGGCGTACAACATTCACCAGAGTCAAAAACTTGAAAGCAGGATAAAGAAAGTTGAGGAACTTCTTGCTCAGATTGATTCggaggatgaagatgaagagTTTGTCAATGTTAACAACAGCGGTTTAATCATTTTCAAAGAGTTATATGACAAGCTTTATGACTACCAACGAAATGGAGTGGCCTTCTTATACAGTCTCTACAGAGATGGTCGTAAAGGTGGGATCTTGGCAGATGACATGGGCCTTGGTAAAACCATCCAGGTGGTATCATTTCTCTCTGGCATGTACGACAATGATATGGCTAAACACACACTGCTGGTCATGCCAACCTCACTCATCACAAACTGGACCAAGGAGTTTGCCAAATGGACTCCTGGCCTGAGGGTGAAGGAGTTTCACGGTGCGGGCAAAGAGAGGACCAGGAATTTGGAGAAAGTTCAGAGAAGAAATggcatcatcatcaccacataCACAATGCTCATGAACAACTGGCAGCAATTGTCGTCATACCATGGCAAAGAGTTCACATGGGACTACATGATCCTGGATGAGGCACACAAGATAAAATCCACAGCCACGAAAACGGCCAAAAGTGCCGCCGCCATACCTTCAAAAAACAGAGTTCTTCTCACAGGCACTCCAGTCCAGAACAACCTAAAAGAAATGTGGGCTCTCTTTGACTTTGCTTGCCAAGGCGCCCTCCTCGGCACAGCtaaaacattcaaaacagaGTATGAGAACCCCATCACCCGGGCCCGAGAGAAGGACGCCACTCCAGGGGAGAAGGCTCTCGGGTCTCGGATGTCTGAGAACCTCTTGACCATCATTAAACCTTACTTCCTCCGCAGGACAAAAGCAGAAGTGCAAAAGAACAAAATGAACGGCACACATCCGTGCGAAAGGGACTATTCGGACAAGGACAGCAAAGTTCCAAACCTTCCAAAAGACTCTGGAGCAGTCATGCCCACGCTGACGAGAAAGAACGACCTGATTGTCTGGACTTACCTGAGCTCTGTTCAGGAAGACGTATACAGGCAGTTCCTTTCGCTGGACCACATCAAAGAGCTGCTCATGACCACCAGATCACCTCTAGCTGAATTAACCATAATGAAAAAGCTGTGCGACCACCCAAGAttgctttctgctgcagccatAGCCAAGTTAGGCTTGGAGGAAAGTACagctgaaaatgaaaacatggaggcaGACACAGGCAGCATCGCAAACGTTTCTGATGACACCTTAATATCTGAGTCTGGGAAACTTGTCTTTCTGTTTGCGCTGCTCGAAAGGCTCAGAGAAGAAGGCCACCGCACACTCGTCTTTGCTCATTACAGGAAGGTGCTTGACATCCTCCAACGCATCCTGGGCAACCGAGGCTTCAAAGTATTGAGACTGGATGGCACAATAACGCAGATTGCAGAGAGAGAGCGGCTCATTACTCTGTTCCAAACAGACAAACGTTACTCTGTCTTCCTCCTGACCACCCAGGTTGGAGGAGTTGGCATCACTTTGACGGCAGCAAATCGAGTCGTGATCTACGACCCCAGCTGGAACCCAGCAACAGATGCCCAGGCTGTTGACAGGGCGTACCGCATCGGCCAGACTGAAAACGTCGTTGTCTACAGGCTGATAACCTGCGGCACGGTGGAGGAGAAGATCTACAGACGGCAGGTTTTCAAAGACTCTCTCATCAGACAGAATACTGGGGACAAGAAGAACCCTTTTCGGTACTTCAGCAAGCAGGAGCTGAAGGAGCTCTTCATTCTGGAGGACCCACGGTCCTCATCTACACAGATGCAGCTTCAGGCTCTGCACTCCAGACACCGACGGACAGACCCTGAACTGGACGAGCACATTGCCCACCTCCACTCCATGGAGATGTTTGGGATCTCTGACCACGACCTGATGTATTCTCTCGATGTCAACCGTGACGAGGCCGAGGACCAAGAGGCGCACCTCTACATTGAAGGGAGGGTCCAGAAGGCCCAGGAGCTGATGAAGGCTGAGTCAGAATTACAGATGCAGTTGGCAGAGAGCATAGCTTCAAGCACAGAACCAGCCTGGCTCAGACAACCACTGGACAACCACAACAGAGAGCGGTCTAATgacaaaaagacaagaaatccAAGACCAAGTCCTTCCTATCCACAGCCTGACCACAACTTCAACGGGTCACCTGTTGTGGTGGAGTTGGACCAGTCGGGTTCTGACAAGGAGGCCAGCCAACAGAATCTGAGTGACAGAGTCATTGATCTTACTGCAGATGACAGTATGTCAGAAGAACAACCTTTTGTAGAAGTAAGCCAAGACAAGCTTGCCCAGCAGAAGCTGGATTCCCCAAAACACCAGTCTGTCAAGCAGGAGAGACGTTACCTGATAGAAGAAGACGCCGCTCCTCAGGAGGTGATTGATGTGTCTTTGGTGATGTCAGAGGCCAGTGATGCTCAAGCAGGTGATAAGGCAGATGCCTCTGTTCAAGAATTAATGGATGAGTCTGCATCGTCTGAGGATGCAGGTGCTTCAGCAGGTGACGGCAGCCCAGCTTACATTACAGCACTTGATGAAGATAAGGAGCTAAACGGAACTTCACACTCAGAATACAACTCCAAGATGGATTTGGGGCATTCACGTGTCACACCCCtgcaaaacaaaagactttctgTCTTGCAAGCATCCTGTTCAAGCTTCAAAGCAGACACATCATCAAGAGTCAGCACAGGGATTGAATCCTTTGAGGGCAACTTCCATTTACAGCTTGAGGACAGTGACATGTTCTCAGACCATGATGTCCTGGACCATCAGGAGACGgaagcagaggagaggaagctGCTGTTGCAGCTGCAGATGGAGGGGagttttgacataaataaatCCCTTTCTGAGAGACAACATGGAAAAGCGCTCGGCCAAAGCCTTAACGGCACCTCTGAGATGGACGGTTCAATGGATGATTCCATTGTGGTTACCAAGAAGAAAAGAGCAGCAGTGATTTATGATActgatgaagaagaagatgatgatgataggaGTCAACTCAACAACTCCTTCCAGGCTCTTGGAGCGTCAACACCTAAATCTGCACCATCTGGCCCCAGCCCTCTCAGGTTGAGAAAGAGTGTGGGAGGAAACCTCTCCGTGGCCTCACGCCGGTCCCTCCTCCTGTCCATCATCGACGACATGGAGAACCACAATGAAGAGATGACTGATGAGGACGAAGAAGATGATGACGTTTCAGAGAGGCATTCTGATGAGGCCGAAGAGGACGACATCGTTGGTTCAACTCCGGATGAGCTTCAGCTGGAGAAGACTGTCGGAGAAACATTAAACACagagggtgaggaggaagaagaagtagtggaggaggaggaggaggaggacgatgatgatgatgatgatgatcatcaGTACTCTGTGTCGGCAGATTCCGCCGATGTGTCAGGACAGGAAATGAGCAGTAACATGGAGCAGTCAACCGGTGAGCCTGAGCTAGTGTCCTCCGAGAGGATGGATCAGTGCACCGTTGATGCAGGAGTCAAGACGAAGCTTTCCGTCGAGGAGGAGAGCTTTGACTCCCTGGTCAGTAAAGGGAAGGCGTGCCACAGCCAAGGGAAGCTGGACGACGCCCTGGGCTTCTTCCTGAGGGCTATCGACATCAAACCTGGAGATCCTGAGGTTCAGCTCATGACCATCCAACTGTACCGACAGCTGAGTCAGAGGAGTTAGCTGTTCAGAACAATCCTGCGATGTAAACTACTTCTAACACAACCTGAAATTATACTGTTAGAATGTTCAACAAATTCAACGTGCAcactaggggtgcacgattcagaaaatgtcacggtTCGATATTGATTTGTAGGCTCAAGATtagattcaaaatcgatttacaattttgaaaaaaaaaaaaaatattcacagtatttttttaaaaacacaacaaattaaatgtacttTGATATTAATTTAtatgtcttcatacaaaaataaattttgcAACTAAAATCAAATGGTATACACGCcattacaaaatgaagaaaaaaaaattattgatttttggaattctataaattttgattttgaatctgtagagcttgaatcgcgatccgaatatgaatttttttttttattatttttgcgCACCCCTAGTGCACACCAAAACGAACAGTGAGTTAGTCCATCCATCCAGACTTATTCTTTAACTTTGACACAGTAACATCACCTCAGTAATATAGACTCTTTCCTTAACCTCTTGCTCAGACATGATCAATGTGCTTCTTAAACTGATTTGGAATTTACCTATGGCATGTAACTACCAGCATTGAAGGTAcaattttatttctaaagaattaaaggggcgctatgcagtttaggcaatttcttcgctgttttctcgctttttgctcgccgggtttctctatagagctccaccTACCTATTAACGCTGTCGGAAAAACTTGTTGGCGACTCTCCCCCGTCCCATCTCCTCCCTCTggtcatgtgcatttgttttcaataGAAGCCACCGAACGCATAGAGCCATGTCCACTGAGGTTTTTCTCGAAATATTACCCTTCTCTCCCGGATCCCTAaccttgttcttttttcctacaatggccttagaacgctgtcggagcagaagcaacttgcattggccaacatcaagctgacaagaaactgTTAGATAACGTTTCTGATCAAAGATACTTAAAAGTGCAACAGCAAGAACGCCAGGTCAGCATTGGATTTGCAGGCTTCTGTCTCAGTTCTCGCCATTCTGAAAACGCAGGTCCAATGTTTACTcatgtctgactcctcgctcggtcagtctgccgtttcctcttcctctgttcctccgacaatgctttcctagctttctgcttatTTTTTGCTgactcagccatgacgatagtgtgaaaaactccattgctaccttgttcttatagctagccggttcctggaTGGGGGCGTGTAGCGGCCATAAACGGTGAAAGAAAGTAGCGGCGTGTAGTTTATTACATCCatggtgtatgtgtgcagtgccgttaagcaattcgttacatcgcgagacctgatatcacgcgacaCTTCCTGGCGCTGTGGCCGGCAGCTCGCCGGCCGAAAGTCGCAAGGATGgcttttccgctcacaggcgctagggggagcGAGACGtccaccattcaactcgaaaaaagtcatataaccattccaatgactccaaagctcttcagttaaggtaaattaagcttaaaaaaaaaactgcttaaTTCCCCTTTAAtgttttgtcacctttggcATGCAAATAATTTCCATAAACATAACAAATTTGTATCTTTGTATTGTTGCTGTTAAAAGCCTGTATcatattttgtatatttacaGAAATTACAGGAATAGATGTGTTGCATGTATTGTATTGGATCCTtatttgttaataaaaaaattctcTTGAAACCTG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K20093 ERCC6L, PICH; DNA excision repair protein ERCC-6-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82716 lncRNA downstream 21720 15152994 ~ 15180419 (-) True G61742
TU82713 lncRNA downstream 72176 15106265 ~ 15129963 (-) True G61740
TU82676 lncRNA downstream 133246 15068542 ~ 15068893 (-) True G61711
TU82666 lncRNA downstream 174744 15026519 ~ 15027395 (-) True G61706
XR_005639397.1 lncRNA downstream 184323 15013596 ~ 15017816 (-) True LOC120559984
TU82799 lncRNA upstream 40989 15252693 ~ 15253905 (-) False mfsd14bb
TU82801 lncRNA upstream 92025 15303729 ~ 15306067 (-) True G61813
TU82830 lncRNA upstream 213847 15425551 ~ 15427495 (-) True G61837
TU82900 lncRNA upstream 247129 15458833 ~ 15462921 (-) True G61894
XR_005639525.1 lncRNA upstream 330128 15541832 ~ 15544351 (-) True LOC120560849
XM_039803697.1 mRNA downstream 2789 15158381 ~ 15199350 (-) True adam9
XM_039803864.1 mRNA downstream 49530 15109016 ~ 15152609 (-) False ogdha
XM_039803862.1 mRNA downstream 49530 15109016 ~ 15152609 (-) True ogdha
XM_039803865.1 mRNA downstream 49530 15109016 ~ 15152609 (-) False ogdha
XM_039803863.1 mRNA downstream 49557 15109016 ~ 15152582 (-) False ogdha
XM_039803700.1 mRNA upstream 4848 15216552 ~ 15218422 (-) True sdhaf1
XM_039803701.1 mRNA upstream 13266 15224970 ~ 15232693 (-) True LOC120560831
XM_039803704.1 mRNA upstream 40911 15252615 ~ 15278184 (-) True mfsd14bb
XM_039803709.1 mRNA upstream 97354 15309058 ~ 15317062 (-) True LOC120560836
XM_039803710.1 mRNA upstream 97354 15309058 ~ 15317052 (-) False LOC120560836
TU82671 other downstream 160775 15036979 ~ 15041364 (-) False tti2
TU82656 other downstream 184426 15013533 ~ 15017713 (-) False LOC120559984
unassigned_transcript_258 other downstream 233562 14968496 ~ 14968577 (-) True trnas-gcu_3
unassigned_transcript_257 other downstream 233979 14968079 ~ 14968160 (-) True trnas-gcu_2
unassigned_transcript_256 other downstream 234379 14967679 ~ 14967760 (-) True trnas-gcu_1
TU82785 other upstream 4846 15216550 ~ 15218409 (-) False sdhaf1
TU82789 other upstream 13391 15225095 ~ 15232689 (-) False LOC120560831
XR_005639521.1 other upstream 158123 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other upstream 158123 15369827 ~ 15402324 (-) False LOC120560838
TU83104 other upstream 1292922 16504626 ~ 16505067 (-) True G62064

Expression Profile