RNA id: XM_039803727.1


Basic Information

Item Value
RNA id XM_039803727.1
length 5947
RNA type mRNA
GC content 0.51
exon number 25
gene id LOC120560845
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15472070 ~ 15502444 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAGAAACGAAAGTGAAAGCAGCCAGAAGCCTGAGGACGCTCCGCCGCCTGTTTGTGTCAGTCTGTCGGGCTGTTTGTACCGGACGGCACGATGGAAGGAACCGAGCGCCCGCCGCCTTTGATCGTGGAGGGGGACTGGAGCCCGGCTCAGACCAAAACTATGAAGAACAAACTGCAACTTTACTTCCAGAGCAAGAAGAAGTCCAGCGGGGGAGACTGCCGGGTGGAGGCGGAGGACGGAGCTCCGAGAGCCGCCGTTTACTTCAGATCAGAGGAGGTGAGAGAGCGAGTCCTCGCCCGGCAAAACCACGAAATCACCCTGGAGAATCAAACTGTCAAGTTACGTCtgatttctgcatcaAGTCCAACGAACAGTGACGACGTCTCAGATTCATCGACAGATTCAAAGTCTACGAAGTCAGAAGTTGAGCCTGGAAATGGAGTTTCTGCACAGAGCAAAGAGGAGTCTGTTCAGAGCGTCGCTGTGGTGTTGGACAACGTGTCagacaacatgtccacagacaTGCTGTCCATGCTGGTGGAGAACATCTCGGGCTTGGACGAGAGCTGCTACAGTCTGGAGATCATCTGGGAGACCAACAGAGCCATTGTCAcctttaccaaacctgcagATGTGGAGAAGTTCCTCTCTGTCAGTGAGTCCAGCCAGAAGCTGCAGAAACGCGGACTGAGCGCTCGGCCACTGGAGGCAGCAGAGAGCGTCCGAGTGGAGAATCTTCCTCCGACTGTGGTTAAAGACATGTTGGAGCTGTATTTTGAAAAGAGCTGGGCTCTGCCAGAAAATATCGTCATGATCCCGAGTGAACAGGCTGCCATTGCAACTTTCAACAACCCCAAAGTTGTGGAAAGCATTTGCCTAAAACAAGACGTTGTGATGCGGTCCATCTCTGTCAAGGTGTATCCGTACTACAAGTCCCTGGGCACCGCCCTGTACGGCAGCGAACGACCATCATGGAAGATGCCCGAGCCCTTCACAGAGAGCGTTCACCATGTTGTCTGGAAATTCCTCCTGATGAAGAAACTGTTAAAAACCATCAACGATCAGATGCGTCCGTACTTCTGCAGTGTGGACTTGGATAACCCTGAGGTGAAACTCAGCCCTCTTCCGAGCTTTTTGAGGCAGAAAGGTCTGACGGCCAAACATGTAGATAACTGGACGAGCACCGCCCGAGAGGCCTTCCGTCAGCAAATGTCTCAGTACACGGCCTTTGAATGTACAGCGAACGCACGTGCATGGAAAGCTGCAGAGAAGGAGGTCCGTTCGCTTGTCAGGGAAGACGCCGTCCTGGTGCTGGATGCATCCAGGGGGATTTTGACCGTGGCTGGCCGAGCTAACGACATAAAACAAATCAGGGCTCCAGTGGAGAACATCGTTCTTAAAGCCATGAGTCAGATGAAACGGCAGACAGAGGGTGTCTCTGAGGTAATGGTTATGTCCCCTGCAGAGTTCTACATCCTGCAGCAGGGTGGGGTGCAGAAAGCTGCCCAGGACATTTCCCCTGACATGAACCTCTCCTTTGATAAAGGCACCCAGACGTTAACCATTACAGGACTCCCTGCAGAGGTTTACCAGACTAAGTCGTGGATCTTGGAGAGGAATATGACTATGAGTAAAAAGCAGCTGAATGTCCCCACACATCTTCTAGACTTTCTCAAGTCAGTGGATCCCATGGACATGTCCCAGGACCTGTTCACGTCTCAAGGCATCAGTGCCATCTACAGCATTGAGAGCAAAGGGGTTTTCCTGTTGGGGACTAATGAGAGTGTCCTCGCTGTCGCAGAGAATAAGATGAAGACCGTTTTGGGCGTACAGACTCTGGATGTGGAAGACCAGGAAGTTCTTCAACTTCAAAACTGGGTAAGCCTGAACAAACAGCTGTTGGACACCTGCAACTCCTTAAAGAAGAAAACAGTGGCCATTCAGATCCAcccagagaggagagacaaaGTAACCGTGGCCGGCTTCCTGAATCCAGTGAGAGAGGTCAGCAGCAGTCTGAAGGAATTCATTGTGAACTACTCACGAGTTCAAGAAACCATTTGTGTCGAGTCATGCGCTGTTGTTCAGTTCATTGACAAGAAAAAATCACAAGATTGGTCCATTATTGCCAAGGATAATGATGTAGAAGTCCGTTTTGATCCAGAGAGGCCAAGAATCACCCTCGCTGGGGCTCGTCTTCACGTCCAGAAAGCCCAAATCTGCTTTCAGAAACTGACCAGTGCTCTCTCCACTGACAATTTCATTGTGGACAAGCCTGGAGCTAAGAAGTACTTCCAGACTCAAGGAAGCCTGTTCCTGTCTACGATAATGACAGAGCTGAGCTGTGTGGTGATGCTTCGTCCAGAGAATCAagacgaagaggaggaagagaactATGAGGAAGACAATGTCCTTTGTTATTGCAAAGTGAAGACCACGAGTGGAGTTCTGATTTCAGTCAGCAAGGCAGACATCTGTAGCTTCCACGTGGACACAGTGGTCAACGCAGCTAATGAGGAATTACAGCACATTGGCGGCCTGGCTTTAGCCCTGCTAAATGCTGCGGGACCCGAGCTGCAGAAAATCAGCAACGACCAcgttaaaaaaaatggaaaactaCGTCCGGGTGACGCCATCGTTACAGGTGCATGTAACCTGCCTTGCAAGTACATCGTACATGCAGTCGGCCCACGTTTTTCTGACTTTGACAGGAAGACGTCAGTGTCACGTCTGAAGTTTGCTGTTAAAAATAGTCTGGCAGAAGCAGAGGGAGTGAAATGCTCCACCATTGCACTGCCAGCGATCAGCTCAGGTGTGTTCGGTTTTCCTGTTGAGCTCTGTGCTGAGACCATAGCTCAGGCAGTGCGGGAGTACTGTGATAAGCCAGAAGGTCCAAGATCGTTGACAGAGATTCACCTGGTGGACAACAATGATAAGACCGTAAGAGTCCTGGCCACAGCTGTCAACAGAGAGTTCATGGACCTCGGACCTACTATGACGGTACCACATGCGGCAGAAGGAACAGGCACGGGGGCTTCAGGCGGATATCAGGTGAGTCGAGGTCAGAGCCACTCGCCCAGGGGTGGCCGGTTTGGTAAAGGAGGAGGGCGTGGAAAGGGGGCTGAGGGGACAGGAGCTGGATTCCAGGGAGGTCAGAAAGGTAACAGGGGAGCTCCCAGGGGACACGTCCGGCCTGGAGGACATGGAGGGTCGGGCAGGATGGAGAAGACCACAGCTGAAGGTCTGAAGATTGTTCTGTGGAAAGGAAACATTCAGGACCAGACTACTGACGTCATCGTCAACACCATCTCGGAAGACATGAACCTGAACCAGGGAGCTGTTTCCAAAGCGATCCTGCAGGCGGCCGGGTCCGGTCTGCAGTCAGCTGTTCGGTCCGAAGCCAGGGCAAGCCCACTGCCGTATGGCGATGTCGTCATCACCGACAGCTTCAACCTCAAGTGTCAGAAAGTCTATCATGCTGTTTGCCCGTTTTGGAACAACGGAGCCGGCCAGGAGGAGTTAATATCCATCATCAGATATTGTCTGGAGAATGCTGAGAAAAGTCGGATGGCGTCGTTGTCCTTCCCGGCCATCGGCACAGGAAACCTGAGCTTCCCCAGAGACGTGGTATCCAGAGTCCTGCTGCAGGAGATCCACTCGTACAGCCGCAGGAAAACTCCTCGCTATCTGAGTGAGGTGGCCATCGTTGTTCACCCGAGTGACAACCAAACGGTGGATTGTTTCACCAGGGAGTTCAAAGGTCAGACTGGCCAGAGAAATATCCAAAATGAAGCTCAGGAATTTAACGAGGCACCAGTTAGACCATCAGTCAGCCAATCACAACAGTCCTCAGcCTCCTTCGGTCAGGTGTCGTCCCCCTCCCTCGGTGTGTATCGGATGCAGATGGGTCAGCTCACCCTCGAGGTGTCATCTGGAGACATCACCAAGGAGGcctgtgatgtcatcatcaaCTCCTCCAATCAAACCTTTACCCTAAAATCAGGAGTGTCGAAGGCGATCTTGGACAGCGCTGGACTAACAGTTGAGCTGGAGTGCTCAAGGATTGTAAATTCTCCGAATTACCAGCCTGGTCCGTTCATCCAGACGTCGGCCGGCAAGCTGCCCAGCACACACATTATCCACGTTGTTGGCCAGAATGATCCTGCAAATATTAAGGATGTGGTTTACACAGTGCTGAAGTTCTGCGAGGAGAAGAAGCTCAGCTCTGTCTCCTTCCCGGCCCTAGGAACAGGTCAGGGAGGGGTCAACCCGTCGGCGGTGGCAGACGCCATGGTGGATGGGGTGGTGGACTTTGTGAGGAAGAAGCACCCGAGGTTTGTTTGCAGCGTAAAGATCCTGATCTTCCAGACGGTCATGATGGCGGAGTTTCACAGGAgcatgaagaggagagagggggagcagGTGGAGGCCAAGAGCGTCTTCACCAAGATCAAAGACACTGTCACTTCGTTTTTTACGGGACTTGGGGAGGAGCGACCCAGCACTGATGACCTGTTTCTGGAGAGAGAGGAGTTTGAGCCCACAGTGTTTCAGCTGTGTGCCGACAACGACATGGCTGTGAGTCAGGCTAAGAAAAGGGTTAAGGAGCTGATTCTGGCCGAGCAGGCGGAGAGAACCATCAAAGACCAGTACATCAGTCATCTGTCGCAGGCCGACTTGGACGAGCTAAATTCCCTGCAGAGGAAACTGACGGTTAGCATCCGTCTGAACCGAGGGATGGAGGACCAGGACTCCAACATCCACCTGGAGGGTCTGACCAGAGACGTCTACACCGCTGAGTCTGCAGTCAGGGACATCATCCGCAAGGTGGAGAGGTCGGAGAACTTGAAGAGCAAGGCCTTGCTGCTGAGTGGACTGGTAGAGTGGCAGTTTGAGATCACCAGCGGGGTGATGGTACCCTTTGACATTTACACCAACCTCCACCTGGAAGAGGCTctggaaaaacaacaaagtgtgaCGATCAAGATCAACAACGAGAAGTACCATGCTCAAGTAATGCTTAGAAAAGCAGTGTCAGAAAGTGGTAAAGCCTTGGAGCTACATAGAAAAGATATGAAAGATGACGCCGCTCTGCCATCAAATTGGAATGACATGAAAAGCGACCTCCTCAAACAGGTTCCTCTGACTCCAGGATCCAAGGAATACAACGATGTGGAGACGGAGCTAACAAAGACCGGTCTCGCTGCAAACATCCTCAGTATTGAACGAGTCCAAAACACGACACTGTGGCAGAGCTACCAGCTGATGAAGAAACAAATGGAGGTgaagaacaaacacacaaacaacgaGATGGTGCTGTTCCACGGCACCGGAGCCGCCTCCATTGATCTCATCAACAAACAAGGCTTCAACCGCAGCTACGCAGGAGCACATGGTGCGATGTACGGTAATGGATCTTACTTTGCGGTAAACCCGATCTACTCAGCACAAGGCTACGCCAAACCCGACGCCAACGGCCATAAGCGCATGTACGTGGCCAGGGTACTGGTCGGAGACTTCACCCAGGGAAGAAGTGGCATGATCACCCCGCCCTCCAAGAACTCCAGGAATGCTGCAGACCTGTATGACAGTGTTGCAGATAACAAAACCAATCCAACCATTTTTGTAGTCTTTAATGACATTCAGGCATACCCAGAATACCTGATCACATTTACATGAATGAAGCTATGATTACACTGTGCTGCAATTCTGATGAAAATGTTATGAAAATTCTATTATTTGTGTTTTAGTTTGAATTCCAATTAAGTACACAAAAACTGTTTCAAATTATTATGTAATATTGTAACATTGCATATTTCCTGAAGGGGCACTTTCCATTTTCTTGATTTGGTTTCAACCcctacttgagtaaatgaaaagaaaggaTTAAAGTTTGCtagaaaatgaacaaaacagAAGCATGAACAAGAATATTTTAAAACTCA

Function

GO:

id name namespace
GO:0046686 response to cadmium ion biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82900 lncRNA downstream 9149 15458833 ~ 15462921 (-) True G61894
TU82830 lncRNA downstream 44575 15425551 ~ 15427495 (-) True G61837
TU82801 lncRNA downstream 166003 15303729 ~ 15306067 (-) True G61813
TU82799 lncRNA downstream 218165 15252693 ~ 15253905 (-) False mfsd14bb
TU82716 lncRNA downstream 291651 15152994 ~ 15180419 (-) True G61742
XR_005639525.1 lncRNA upstream 39388 15541832 ~ 15544351 (-) True LOC120560849
TU82980 lncRNA upstream 271235 15773679 ~ 15777138 (-) True G61956
TU83024 lncRNA upstream 435532 15937976 ~ 15939248 (-) True G61993
TU83027 lncRNA upstream 480432 15982876 ~ 15983411 (-) True G61996
TU83032 lncRNA upstream 593977 16096421 ~ 16100383 (-) True G61998
XM_039803722.1 mRNA downstream 56611 15409196 ~ 15415459 (-) True srp19
XM_039803721.1 mRNA downstream 63769 15403848 ~ 15408301 (-) True rsph14
XM_039803720.1 mRNA downstream 69746 15369026 ~ 15402324 (-) False LOC120560838
XM_039803729.1 mRNA upstream 1930 15504374 ~ 15514901 (-) True LOC120560846
XM_039803731.1 mRNA upstream 67255 15569699 ~ 15577254 (-) True LOC120560851
XM_039803732.1 mRNA upstream 78848 15581292 ~ 15590436 (-) True LOC120560852
XM_039803733.1 mRNA upstream 88901 15591345 ~ 15602271 (-) False LOC120560853
XM_039803734.1 mRNA upstream 88901 15591345 ~ 15601580 (-) True LOC120560853
XR_005639521.1 other downstream 69746 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other downstream 69746 15369827 ~ 15402324 (-) False LOC120560838
TU82789 other downstream 239381 15225095 ~ 15232689 (-) False LOC120560831
TU82785 other downstream 253661 15216550 ~ 15218409 (-) False sdhaf1
TU82671 other downstream 430706 15036979 ~ 15041364 (-) False tti2
TU83104 other upstream 1002182 16504626 ~ 16505067 (-) True G62064
TU83119 other upstream 1046178 16548622 ~ 16550256 (-) False LOC120561322
TU83120 other upstream 1046178 16548622 ~ 16551175 (-) False LOC120561322
TU83121 other upstream 1046178 16548622 ~ 16550256 (-) False LOC120561322
TU83278 other upstream 1621552 17123996 ~ 17124477 (-) True G62194

Expression Profile