RNA id: TCONS_00075440


Basic Information

Item Value
RNA id TCONS_00075440
length 717
lncRNA type inter_gene
GC content 0.36
exon number 4
gene id XLOC_038054
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 40388580 ~ 40484854 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGTGCGCCACCCATTtgattagtttttgtttgttttgttatccattaaaactttaaaagttcGTCAGTTTCCCGTCTTCTCATTCCATTGAACTATTTATCGACAGAATTGGAGCTTGCCTTCTCTCTCACCAAGCAGATCCTTGCAGACCTAGGATGGTGAAAATTTTCTGATGGCACCCTGAAGGTTGCCAGGCTTCATCACTTGTTCACTGCTTCAAGAACAAGTTGAAACCAGGCCGCGAGGCTCTTCATCACAGTGATGCTGCTTAGGCTTAACAGATAAGATGGCTTCCTCTCTGAGAACTCGTGAAGTGGCAGGACACTGCAGAATTGAGGATGGACAAAAATGTCAGcttttgttcataaaacagtTTCTTTGTCTTTGTTCCTTCCGTTTTCTCTTCCCATAGATTGCTTTCCagtgtttttaaacattattctttttttttaaatgacatttgaaTGTTTATAGATGCTGCTTTCATCTTCCATATGCATTTCTTTTTAGTttctaagtgtgtgtttgtgtctgttttaGTAAATAATGCTTTTTCCAAAGAGCGTCTGATGTTAAAGTGCTTCTATTATGCTTCTAATTTTGTTTTGGACTATTAATTTTAtgagtcatgtttttttttgttacattgtttcattattcattaataataatgtaaaatgtctGATTCTGCAACATGTTACAGAGTTCATACGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075438 lncRNA downstream 79982 40388580 ~ 40393559 (-) False XLOC_038054
TCONS_00075437 lncRNA downstream 82837 40388580 ~ 40390704 (-) False XLOC_038054
TCONS_00075435 lncRNA downstream 160975 40080890 ~ 40312566 (-) False XLOC_038052
TCONS_00075436 lncRNA downstream 374952 40081524 ~ 40098589 (-) False XLOC_038052
TCONS_00075434 lncRNA downstream 458739 39994760 ~ 40014802 (-) True XLOC_038051
TCONS_00075441 lncRNA upstream 133317 40618165 ~ 40619015 (-) True XLOC_038057
TCONS_00075442 lncRNA upstream 239431 40724279 ~ 40726698 (-) True XLOC_038058
TCONS_00074644 lncRNA upstream 282207 40767055 ~ 40777341 (-) True XLOC_038059
TCONS_00075443 lncRNA upstream 442442 40927290 ~ 40933462 (-) False XLOC_038062
TCONS_00075012 lncRNA upstream 610598 41095446 ~ 41101432 (-) True XLOC_038068
TCONS_00074635 mRNA downstream 400286 39960399 ~ 40073255 (-) False XLOC_038051
TCONS_00074634 mRNA downstream 456362 39960399 ~ 40017179 (-) False XLOC_038051
TCONS_00074633 mRNA downstream 459202 39960399 ~ 40014339 (-) False XLOC_038051
TCONS_00074632 mRNA downstream 461868 39960399 ~ 40011673 (-) False XLOC_038051
TCONS_00074631 mRNA downstream 504721 39960118 ~ 39968820 (-) False XLOC_038051
TCONS_00074640 mRNA upstream 132367 40617215 ~ 40683768 (-) False XLOC_038056
TCONS_00074641 mRNA upstream 149673 40634521 ~ 40683722 (-) False XLOC_038056
TCONS_00074642 mRNA upstream 149787 40634635 ~ 40664923 (-) True XLOC_038056
TCONS_00074643 mRNA upstream 200765 40685613 ~ 40765868 (-) False XLOC_038058
TCONS_00074645 mRNA upstream 344621 40829469 ~ 40846447 (-) True XLOC_038060
TCONS_00074637 other downstream 88294 40385130 ~ 40385247 (-) True XLOC_038053
TCONS_00074636 other downstream 123372 40081524 ~ 40350169 (-) True XLOC_038052
TCONS_00074627 other downstream 1218331 39230526 ~ 39255210 (-) False XLOC_038048
TCONS_00074623 other downstream 2003975 38469446 ~ 38469566 (-) True XLOC_038043
TCONS_00074619 other downstream 2269013 38204407 ~ 38204528 (-) True XLOC_038039
TCONS_00074639 other upstream 24681 40509529 ~ 40509643 (-) True XLOC_038055
TCONS_00074649 other upstream 458271 40943119 ~ 40953573 (-) False XLOC_038063
TCONS_00074657 other upstream 587972 41072820 ~ 41072935 (-) True XLOC_038066
TCONS_00074667 other upstream 666444 41151292 ~ 41156972 (-) True XLOC_038069
TCONS_00074674 other upstream 960943 41445791 ~ 41446719 (-) True XLOC_038074

Expression Profile

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