RNA id: XM_039804056.1


Basic Information

Item Value
RNA id XM_039804056.1
length 3486
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC120561103
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41837626 ~ 41858498 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAAAGCCAAAGTGCAGTTTCTCTGATATATCTTATAAAAAGGAAAATCTATCTTTGTCCAGTCAGTGCTTCTCTGTCTGCGCTTTAACCAGGAGAAGGGCAATGGCAGATTGGAAGAAGAATTGGAGGCTCCTGATCCTCTTCAGCCTCCTCAGCCTCACTGAACTATTCGAGGTGAGAGATGAAGAGTGGAAGGAGCTCAGCCCGGATATCGCTGCACTACACCAGCTCAGAGGACTGTCTGAACACATGTTTCATGAAAATATCAGGAACCCACCGAACCACAGGTCTCTTGTTATGGATTTGTTCCTTGTTCCTCTCCATAGGGACACAACCGTGCTTGGGACCAGAGATGTGTTGAAATCTGTTAGCAGGGAGGACATTGACCAAAACCCGATGACTTTGCTGGCTGATCTTCAGGAGAATGACAATTTCACATCTTTTGTCATTCAGAAGGAACAGGATTTTGAAGGCTTCTTGGCAGCAATTGATAAACAGAAGACACAAAATTTGCTGCTGAGTGCTTCGGAGATCTCGCACAGCTACAGCCAAAAACTTCTGGTCATGACCGACAAAGAAAAGTCATCAAATGACAGAGTCCAACAGGAATACAGCATGGATCCTCATTACTCAGTTATAGTCAGCAATGAATGCCTGTTAAATGTCTCGTGTGTACCAGAAGCAGACAGCTACACCCTGGTGAGAATATTTGGGAGTGTTTCAGAAGATGGCCAAACTGTGTCTGGCCTTTCTGGCTCTTCACTCGCAGAGCTGATGTTGAAACCATCACTGGAAACTGCGCCTGTGTTCTCTCTCGATGGAAACACAACCAAAGACTTCCAACATAACTTAATTCGAGTTTTTACGGCCCGTGGCATCAGAGCAGTCCTAGAAACAACCCAGGAGAATCACCAGACTTACCAGGTCATGAACCAACTTAGAGAAGTTTCTGGATACCAAATTCCACAAAGACCAGTTGATCACAGCACCCAGTACGACCACCAGCAGATCCTCATCCTGGAAGATGACCCTGTTGTCAGAAAAGCTGCTACGTATCTGTTTGAGAAGCATCCAACGGTTTCCTCTGTCTACGTTCTTGATAACAACCAAAGACCAGTACTGATCCGAGGTGACTCCATGCCTCTGACAGAGGACAGCCGGCTGGTGCTGGTCGGCCACGGCAGGAAAGACAACTCGGGAGAAATGAGACTGGGAGGATACGAAGTGCAAGATGTCTCCAAAATCATTCAACAAACCTCCAGGGATTccaataaaattaaaacaataagtGTGGTGGCCTGTGACGTTGGATCAGATAATGCATTCATTGAAACGCTGCTGAAGGATCTCCATGAGACCGCCGGCATCAAGACAGAGCTGCACATCAGAGACGCTGTGCTCCAGGTCagccacacaggagagaaaatcACCCTGGAGATCACTAAGGATGGAGAGCAATGGAGAAATAAAGATGACAGCAAGAAAGTGGTCGCAACACTCGACAGGAACGGAGATGAGGACGAGGCTTTTAGCAGCGTGACGGAGGTTCGCGGGTCAAAGTTCAACGATGACATCAGAGGGAACAAAGAACACAACGTTATTGTcccaggaggaggagatgattTCATCCAgggtagaggaggagaggactGGTACGTTATCACGCCGGGCCAAGGAGTAAAAACCATCAACAATCAATCTCCAGATCTAGCCTTGGATATTCTCTTTCTGAAACATAACATGTACATAAAGTGTTCTTGTGAAGGGCAGAGCATCATCATTTTGGTAGACGGTAGAAAAGATGTTATTTTACAGAACTGGTTTGATTCAAAGTTTCATCAGCATCTGCAGATTAAAACCAGTGATGGAATAACAGCTGGACTGATGACCAACCGCAGCAGCTGTGATGAGGATGATTTGATGTTCCCCATAACTGTTGATTATAGAAATCAGAAACCTGAACCACTTCTTCTGCCCATAACACAGGAAACTAAATACAAGTCTTTCAGAGATGGAAGATGCTTATTCTGCCTTCAAGGCAAAGTGATAGTGATGAGTTATCAGTATTCAGTAAAAGAAATGTACGGTTCCTCAGGTTTCGACGTCATGGTTGGAAACAGCAATGATAATCTGCTTGATCCATACACTGGAGGTGCCTTAATGTTTGGAGGTGAAGGAAAAGACATTTACGTAATCAAACAAGGATATGGAAACCACTTAATTATCGATAACTTTGCAGAAGATCAGAGTATTGATACTGTGTTGGTTGACATGGATTATCTTCATGGCAGTCAAGTCTCACTGTACTCATCAAAAGAAGATTTGGAAGTGACGATCACATCAAAAGGGGAACAATTCAAATTCACTCTGCTCAACTACACCACTAGTTCCAAATATCAGCACTTAGAATTTCAGAGTTCTGACGGAgtgaattttaaattaaaatcacTAAACTCAACCAGAAATGTCCCTTTCTTTCAAATTGAAGCATTCAAAGTGACTCTGAAACAGCTGCAGGTTGACTGCCGCTTGGATCTCAACTCTCAGAGGAATCTGTCAAAGGTCCACACGGTGCAAGGCTGTCCCTCCCAGTCCAATGACATACTAGGTAACGATCAAGacaacgctctgattggtgggTGGAAGGATGACGCCTTGGAAGGAGGCGCCGGAGATGACACGCTGATCGGAGGGAACGGAGACGACCTCCTGATTGGTGGcttgggagatgacactctttATGGCGAGGACGGAAATGACACCATGATGGGAGACTCTGGCCAGGACGTCTTCCTTCCTGGACCAGGGGCCGATCTGGTGGATGGGGGTCCTGGCAGAGACACGGTTGTGTACCGGGGCGATCCTGACACAGGTAAAGGAGTTTATGTCAACCTGCTGACGGGACAAGGCCGCTACGCCGATGCTGAGGGCGACGTGTTGAAGGATGTGGAGATAGTCATCGGCACCGTCTACTCTGATATCTTAGTGTCCGGTTACGAAAGTTCTCTTCTCAAAGGCTCGGACGGTAATGACATCTTGGTGTCGACCGGTGGTGATTACCTGGTTGGTGGTGATGGAAATGACATTTACATGTTGGCTTTCAACAACGGTTCAGTCACGGTTGATAACTGTGCCAAAGACAACGCTACAGACGTCTTGTACATGAGCTCACAGTCAACGCCGCCATTTGACTGCCAACTTTTGTCTGATAGAGTTCTCCTGACTTTCTTTGGACTTAACCAAACTACAGTTAAAATTACACTGCAGGGCTGGATCAGTGATGAGAACGAATGTGGTCATTTGAAGTTGGTTTTTAGAGATCTGGAGGTGTCGGTGGACCAGCTGCTGCAAGAGTGTCAGTTAAGACAGCTGGAAAAATGTCCTCTTTGCTGGGTTTTCCTTTGTgcaaacaagaaaaaacaacaacaagagaTATGGGAACAACTAGAAACAAATGTTCATTCAATTGCTAGCTGGCTGATATAG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92295 lncRNA downstream 64899 41767003 ~ 41772727 (-) True G68917
TU92502 lncRNA downstream 93138 41743438 ~ 41744488 (-) True G69062
TU92496 lncRNA downstream 103826 41733369 ~ 41733800 (-) True G69058
TU92257 lncRNA downstream 136155 41660768 ~ 41701471 (-) False G68882
TU92296 lncRNA upstream 5278 41863776 ~ 41864424 (-) True G68918
TU92522 lncRNA upstream 44403 41902901 ~ 41903622 (-) False G69078
TU92524 lncRNA upstream 44403 41902901 ~ 41903622 (-) True G69078
TU92305 lncRNA upstream 69236 41927734 ~ 41928031 (-) True G68927
TU92302 lncRNA upstream 70737 41929235 ~ 41988063 (-) True G68924
XM_039802475.1 mRNA downstream 21720 41796261 ~ 41815906 (-) True pold2
XM_039802497.1 mRNA downstream 240716 41588921 ~ 41596910 (-) True bag4
XM_039802519.1 mRNA downstream 255274 41572144 ~ 41582352 (-) True LOC120560239
XM_039804054.1 mRNA downstream 288722 41537525 ~ 41548904 (-) True LOC120561099
XM_039802468.1 mRNA downstream 326641 41502111 ~ 41510985 (-) True LOC120560202
XM_039804057.1 mRNA upstream 8741 41867239 ~ 41882013 (-) True LOC120561104
XM_039804059.1 mRNA upstream 80483 41938981 ~ 42022357 (-) True LOC120561107
XM_039804060.1 mRNA upstream 175725 42034223 ~ 42047509 (-) True LOC120561108
XM_039802472.1 mRNA upstream 220088 42078586 ~ 42094518 (-) False LOC120560203
XM_039802471.1 mRNA upstream 220088 42078586 ~ 42094518 (-) False LOC120560203
TU92275 other downstream 8493 41752536 ~ 41829133 (-) True G68897
TU92285 other downstream 55464 41754872 ~ 41782162 (-) True G68907
TU92249 other downstream 435725 41380388 ~ 41401901 (-) False LOC120560231
TU92377 other downstream 760161 41076005 ~ 41077465 (-) True G68985
TU92335 other downstream 887019 40924074 ~ 40950607 (-) True G68952
TU92301 other upstream 69990 41928488 ~ 41929179 (-) True G68923
XR_005639438.1 other upstream 240288 42098786 ~ 42107121 (-) False rnf34a
XR_005639437.1 other upstream 241877 42100375 ~ 42107122 (-) False rnf34a
TU92299 other upstream 249132 42107630 ~ 42116261 (-) True G68921
TU92564 other upstream 254294 42112792 ~ 42114159 (-) False G69104

Expression Profile