RNA id: XM_039804057.1


Basic Information

Item Value
RNA id XM_039804057.1
length 6278
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC120561104
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41867239 ~ 41882013 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAAGTGCAGTTTCTCTGATTTATCTTATAAAAAGGAACATCTCTCTTTGTCCAGTCAGTGCTTCTCTGTCTGCGCTTCAACCAGGAGAAGAACGATGGCAGATTGGAAGAAGAGTTGGAGGCTCCTGATCATCTTCAGCCTCCTCAGCCTCACTGAACTATTCGAGGTGAGAGATGAAGAGTGGAAGGAGCTCAGCCCGGATATCGCTGCACTACACCAGCTCAGAggactgtctgatcacatgtttCATGAAAATATCAGGAACCCACCGAACCACAGGGACACAACCGTGCATGTGGCCAGAGATGAGTTGAAATCTGTTAGCAGGGAGGACATTGACCGAAACCCGATGACTTTGCTCGCTGATCTTGAGGATGAGAATTTCACAGCTTCTGTCATTCAGAAGGAACAGGATTTTGAAGGCTTCTTGGCAGCGATTGATAAACAGAAGACACAAGATGTTCTCCTGAGTGCTTCGGAGATCTCGCACAGCTACAGCCCAAAACTTCTGGTTATGACTGACAAAGAAAAGTCAACAAATGACAGAGTCCAACAGGAATACAGCATGGATCCTCGTTACTCAGTAATAGTCAGCAATGAATGCCTGTTCAATGTCTCGTGTGTACCAGAAGCAGACAGCTACACCTTGGTGAAAATATTTGGGAGTGTTTCAGAAGATGGACAAACTGTGTCTGGCCTTTCTGGCTCTTCACTCGCAGAGCTGATGTTGAAACCGTCACTGGAAACTGCGCCCGTGTTCTCTCTCGATGGAAACACAACCAAAGACTTCCAACATAACTTCATTCGAGTTTTTACGGCCCGTGGCATCACAGCAGTCCTAGAAACAAACCAGGAGAATCATCAGACTTACCAGGTCATGAACCAACTTGGAGAAGTTTCCAGATACCAAATTCCACAAAGACCGGTTGATCACAGCATCCAGTACGGCCACCAGCAGATCCTCATCCTGGAAGATGACCCTGTTGTCAGAACAGCTGCTACGTATCTTTTTGAGAAGCATCCAACGGTTTCCTCTGTCTACGTTCTTGATAACAACCAAAGACCAGTACTGATCCGAGGTGACTCCGTGCTTCTGACAGAGGAGAGCCGGCTGGTGCTGGTCGGCCACGGCAGGAAAGACAACTCGGGAGAAATGAGACTGGGAGGATATGAAGTGCAAGATGTCTCCAAAATCATTCAACAAACCTCCAGGCGTTccaataaaattaaaacaataagtGTGGTGGCCTGTGACGTCGGATCAGATAAAGCATTCATTGAAACACTGCTGAAGGATCTCCATGAGACCGCCGGCATCAAGACAGAGCTGCACATCAGGGACGCTGTGATCCAGGTCagccacacaggagagaaaatcACCCAAAAGGATGGAGAGCAATGGCGACATGAAGATGACAGCAAGAAAGTGGTCGCAACCCTCGATAGGAACGGAGATGTAATTATTAGAAATGAACCCGGCAGTAAAGGAAAGGAAATCTTTACCGCTGAAAGAAACTTTCtaggtaaaacaaaaaaacgtttcctgGTCTACAGAGACAGCTGGCCAGATGAGCCAAAAAGATTTATTAACCAGAATGTTTATGATAACTTGAATGCTAATGAACGTAATGCTTGTAATCAACTTGAAGCTCTATCCTGGGGATTGTTTCATGACGAAAACATACCCCGTCCAGAAAAAATGAAGATTAAAAACTTGGATCTAAAAGAGTATTATttatcccccaaaaaaaaagtaaaaaatgaacaaacagGATGGTATGAGCTTACAGGGGAGGTAGAGAcgataaataataaacaaaaagtaaaagataTTCTTTCCAACTGTTATGAGATTAAATCAGGAGAAGATATCAGGAATGTAATCCGTCACTATGCAAAGGACGGAGAAGATGAGGTTACATACCTGAAGGTCAATGACTGGATATTAGAGGTTAATCCTATAAGTCTGTATGTTTATCTAATCGGAAAAAAGCTTGACAACAATGAAAGAGGAAATGAACAAAAAGTTAAGAAATGTATTGAAGATCAGATAGGAAAAGAAAGATACTCTGACATACGAAAAGGAATTAAAGCAGAAATGGGCCAAAATGACCCTAAAGAAGGATACGCTCAATATGTGGAAGGTATTTTTCGTGGAGAGCCCACAACACCTCGCCTGCCGCTCCCAGCTGAGGCCTGGTGCACCACATATTTCACTGCATCAGTTATATCTGAATCTGCTAGAAACTTCCGGACATTTCCTCTGATTCTCATGGCCCTGGATATGGTCCAAAGCACAGACAACAATATCAAAGCGAATGGACTGAACTTTCTTTGGGAAGAACATTCAATGGCAAGAGGACGTTCTTGGATTGACCCAAGCAGGCGTGAATTTAGTGGCTCAGCCGACTATGAACGTTCCAGCAAATTACAAAACCCAAATCCTTCGACTAGTGAGGAATTAAGGAATGATCTTAAAAAGCTTATAACAAGTGAAATCCAACTGTATGATAAGTGGATTGGAAAAAAAGATCCATCTCAGATATTCAATATCGCTAAGAAATACGAGATAACTGAACCAAATGCAGTTCAGGATTACGAAACGTTCATAAATACAGTAGGTGAGAGCGACTCTACAGCATCCGGAGCATTAGGAGGCTACAACGACGGCCACGTAACATCCCAAGACTTGAAATCTGCCTCTGAGTTGGAAAAGTCCTTCAAACTTGAATCGTATTACTCCAGGCGGAGCGTTTTAACCGCTGAACAAGTCTACAGtcagttaaaggcaaaatatggtGAAAGTCTGGCAGGGTTGCAGGTCCAGGAGGGCAGCGCCAGAATGGAGAACGGAGAGTTTGTGTGTAATCTGTTAAACGGTACTGACGCTAAATCTGTTGAGTTTAGAGCTGAATTATCTCCGGAGAGTCAACACTACTCTAAAGCAATGTCAGAGAGCATTGAAACAGCAGTTCATGACATGGAAAATCATGGTTCCTCCCATCAAGGCAGCAAGTACGTAGAGCACGCTGGGCATGCTGTTGGGACGCTGGGACTCATGCTGGGGATGAAAGGAGCTGTTCGTGCTTTTGAACAGGGTGACTTTAAAGATGGCGTGGTGGGGTCTCTGCAGACGGCTCATGGAGTGACAGCTATGACATCGTCTATTATTGCAAAACAAGCTCTGTCCTCAGAGGCCAGAATGGCCAAAGCTGTAACATCGGTCATGAAAAGACCTGCAAAGAAGGGTTTTACGTCAGTTATACCAATAGTGGGAATTGGATTTGGGATATACAATGATAAACAAGATTTTAAGAGAGGTGACACGCTGGGATATATCGATGCTTCCTTAGATGGTAGTATAGTTGGTTTAGATGTTATTGAAACTGCTCAGCCTGAACTGGTCCCGTTGATAATGCCTATAAACCTGGCTTTATCCGTAGTCCGGATGGGCATTGATGAAATTTATATGGGCGTACAGAATGAACTAAACAACCTCCCGAAAGATGCTGGACTTCTGGAGAAACTGGGGGCCGTTTCTTTAGGCTTTCTGAATGAGATTTGGGATTTTGACATTAGGGCGGCGAGTTTCTTTTATGATTGGCGTTACGATGAAATTGAGCAGGGACACATACTTGTTGCACAGATATCAGACTATCACAAATATTACAAAGTTACAAAGCAACAGGATGGAACGAGTGCCATTGATTTTAGCGGTGGCGACTCTTCTGGGAACGGAGGAGGAATTCACTTCTGCCTCACCGACCAGGGTCCGTCTGAACTCTGCATGGACTATTTTGTGTCTAGTAATGAGAGTTTTGGGAAAAGGTGTTGGCAGATTGATACACAGGGAAGCAAAGATATTATTCTTGGCCTGGGAGAGTCACAGCAGTTAGAGTACACAACACTACATAAGAAAATACTCTGGTTCATACCAGCCGGCTCTGTGACGGTGGTTTCAGGTGTTAAAGCTGTATCAGAGTCAAGGTTTGGGGAATACAAAGGACATAGAGATTCTAATCATTTTTTTGCAATTCAGAAAGCAGAGGATGAACATGTGATTGAAGTCATGTTAAGTTACTATTACAGGCTTTATGGTGAACCAGGTGATGACATATTCTTCCTCGGTCCACAGAGAAGTTATGTTGAAGGATGCGGAGGAAAAGACACGTACATTATTCCTAAAAATGGAGGGAAAACAACCATTAACAACTACGATCCTTCCAAAGCACTAGACACTCTTCATTTCAGTGTTAATTACAGTCACATTTCTGTGTCTAAATCTGGAAATGATGTTGTGTTAATGTATGAGGGAAGTCACACTGTGACCATAGAAGGATGGTTTTTAGGGGAACCGTATCGTCACATGAACATGTTGTCTGGAGACGGAGTCTTGTTTGAGATTTCCTCAGTCGTGGTTTCTTCTGTTCAGCTGGTGGCTGTAGGGGTTAACAAGATGTTTAGTTCTAGAAGTGAAAATGTGAATGCATCCGAGCCACTTTTAAGCAAAGTTACAAACGTCTTTGGGTCTCAGTATGACGATGTGATTGTTGGAAATGGAGAGAATAATATCatagatggaggaggaggtcatGATCAGTTAATGGGCGGTGAAGGAGAAGACATGTACATAGTGAAAGTCAGAAAACAGTCGTCAGTGTTGATTGAAAATACCTCCAAAGACACTAAAACAGACCTGGCCATAATAGAAGCAAAGCTTCACACTTTTAGAGTGGAAGTATTGTATGACAGTATTGTTCTGACAGCTCCCCACAACAACACGCCCATCAGGGTGACTTTAGGGAATTGGTTCAGATCAGCAGCAGACAGACATTTGCTTGTTGTCACAAAAGATTTGATCACTTTCACAATCTCAGATAACAAGGCCGACTGCCTGGACAGGAGAAACCTGTTCACCAAGTGTATTAAAAGTAGCAGCATCGACTACAGCAGCTCACCATCTCCTCTGCTGGTGGACCTACAGGAGGACGAGGCTTTTAGCAGCTTGACGGAGGTTCGCGGGTCAAAGTTCAACGATGTCATCAGAGGGAACAAAGAACACAATGTTATTGTcccaggaggaggagatgattTCATCCAgggtagaggaggagaggactGGTACGTTATCACGCCGGGCCAAGGAGTAAAAACCATCAACAATCAATCTCCAGATCTAGCCTTGGATATTCTCTTTCTGAAAGAAGAATACGAGAACATAAAGTGTTCTTGTGAAGGGCAGAGCATCATCATGTTGGTACATGGTAGAAAAGATGTTATTTTACAGAACTGGTTTGATTCAAAGTTTCATCAGCACCTGCAGATTAAAACCAGTGATGGAATAACAGCTGGACTGATGACCAACCGCAGCAGCTGTGATGACTCGTTAATGTTCCCTGTAACTGTTGATTATAGAAACCAGAAACCCAAGTGTGTCAGCCGTTTCCGAGTCTTCTATGGCCTTCAATGCACAATGATGAATATGATTAATCATGATTCAGTTAAAGAAATGTACGGTTCCTCAGGTTTCGACATCATGGTTGGAAACAGTAATGAGAATCTGCTTGATCCGTACACCGGAGGGGCACTGATGGTTGGAGGTGAAGGAAAAGACACTTACATAATCAAACAAGGATATGGAAACTCAATGATCGACAACTTTGCAGAAGATCAGAGTATTGATACTGTGTCGGTTGACATGGATTATCTTCATTGCAGTCAAGTCACACTGGACTCATCAACAGACGATCTGAAGGTGACAATCACATCAAAAGGGGAACAACTAAAATTCACTCTGCTCAACTACGCCAAAAGTTCCAAATATCAGCACTTAGTATTTCAAAGCTCTGACGGAGtgaattttaaattgaaatcacTAAACTCAACTGGTGATGTACCATTCTTTCAAATTGAAGCTTTCAAAGTGACTCTGAAACAGCTACAGGTTGACTGCCGCTTGGATCTCAACTCTCAGAGGAATCTGTCAAAGGTCCACACGGTGCAAGGCTGTCCCTCCCAGTCCAATGACATACTAGGTAACGATCAAGacaacgctctgattggtgggTGGAAGGATGACACCTTGGAAGGAGGCGCCGGAGATGACACGCTGATCGGAGGGAACGGAGACGACATCCTGATTGGTGGcttgggagatgacactctttATGGCGAGGACGGAAATGACACTATGATGGGAGACTCTGGCCGGGACGTCTTCCTTCCCGGACCAGGGGCCGGTGTGGTGGACGAGGGTACCTGGAGAACACGGTTGTGA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92296 lncRNA downstream 2815 41863776 ~ 41864424 (-) True G68918
TU92300 lncRNA downstream 7727 41749134 ~ 41859512 (-) True G68922
TU92279 lncRNA downstream 8225 41828329 ~ 41859014 (-) True G68901
TU92295 lncRNA downstream 94512 41767003 ~ 41772727 (-) True G68917
TU92502 lncRNA downstream 122751 41743438 ~ 41744488 (-) True G69062
TU92522 lncRNA upstream 20888 41902901 ~ 41903622 (-) False G69078
TU92524 lncRNA upstream 20888 41902901 ~ 41903622 (-) True G69078
TU92305 lncRNA upstream 45721 41927734 ~ 41928031 (-) True G68927
TU92302 lncRNA upstream 47222 41929235 ~ 41988063 (-) True G68924
TU92280 lncRNA upstream 53493 41935506 ~ 41936244 (-) True G68902
XM_039804056.1 mRNA downstream 8741 41837626 ~ 41858498 (-) True LOC120561103
XM_039802475.1 mRNA downstream 51333 41796261 ~ 41815906 (-) True pold2
XM_039802497.1 mRNA downstream 270329 41588921 ~ 41596910 (-) True bag4
XM_039802519.1 mRNA downstream 284887 41572144 ~ 41582352 (-) True LOC120560239
XM_039804054.1 mRNA downstream 318335 41537525 ~ 41548904 (-) True LOC120561099
XM_039804059.1 mRNA upstream 56968 41938981 ~ 42022357 (-) True LOC120561107
XM_039804060.1 mRNA upstream 152210 42034223 ~ 42047509 (-) True LOC120561108
XM_039802472.1 mRNA upstream 196573 42078586 ~ 42094518 (-) False LOC120560203
XM_039802471.1 mRNA upstream 196573 42078586 ~ 42094518 (-) False LOC120560203
XM_039802470.1 mRNA upstream 196573 42078586 ~ 42094518 (-) True LOC120560203
TU92275 other downstream 38106 41752536 ~ 41829133 (-) True G68897
TU92285 other downstream 85077 41754872 ~ 41782162 (-) True G68907
TU92249 other downstream 465338 41380388 ~ 41401901 (-) False LOC120560231
TU92377 other downstream 789774 41076005 ~ 41077465 (-) True G68985
TU92335 other downstream 916632 40924074 ~ 40950607 (-) True G68952
TU92301 other upstream 46475 41928488 ~ 41929179 (-) True G68923
XR_005639438.1 other upstream 216773 42098786 ~ 42107121 (-) False rnf34a
XR_005639437.1 other upstream 218362 42100375 ~ 42107122 (-) False rnf34a
TU92299 other upstream 225617 42107630 ~ 42116261 (-) True G68921
TU92564 other upstream 230779 42112792 ~ 42114159 (-) False G69104

Expression Profile