RNA id: XM_039804059.1


Basic Information

Item Value
RNA id XM_039804059.1
length 1881
RNA type mRNA
GC content 0.62
exon number 14
gene id LOC120561107
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41938981 ~ 42022357 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGAAGTTTccggtgttgtgtgtatgttccTGGAAACATGGCGGCCAGCTTCCGCGGCCGTCCTATCCGGAGTCTTCGGATGCGAGGTCGGAATGACAGCGGGGAGGAGAACGTCCCGCTGGATCTAACCAGAGAACCGGCAGAAAACTTCCGGGAAATCCTTCAAAATGTGGCCAAACCGCACGGAGTCAGTAACATGCGCAAACTGGGCCACCTGAACAACTTCATAAAGCTGCTATGCAGCATCAGCCACCGCGAGGAGAACTTTGGCTTTACTTATGAAGAAATCATTATTTgtcTGCGACTGGCTCTTCTGAATGAGGCGAAGGAAGTGCGTGCGGCGGGCCTGCGGGCGCTGCGTTACCTCATCAGAGACACCAGCGTGCTGCAGAAGGTCCTCCGACTGCAGGTGGACTACTTGATAGCCAGATGCATCGACATCCAGCAGAGCAACGAGGGCGAGCGGACCCAGGCTCTGAGGCTCGTCAGAAAGCGGCGACGCGAGAGAGGGAGCAGAGCAGCAGGGAGCGCCTGGCAGGAGATGGAGGCAGCTCGTCCAGCGGAGGGAACGTGGTGGGGGGGGGCGCCAGCACTCAGTTTAAGAGCCGCAGTCAGAGCTTCAACACGGACACCACCACCAGCGGCATCAGCTCCATGAGCTCCAGCCCCTCCAGGGAGACCGTGGGCCACCCAGACCACCCAGACCACCCAGACCACCcggaaccagaaccagaacctgaacctgaaccagACTCATCGGACTGCGTCAGCCTCAACACCGTGGTGTCTGCCGCCACCGTGAAAACACTGCCTCCTCTCAGCCCCCAGgcTGACTCCAACCACGTGTCCACGCCCAAGTCGTCCTCTGCCGTGTCCCTGGTGCCGCCCGGCTCGTCTCACACGCTCCCTCGCCGGGCGCAGTCCCTCAAGTCCCCGTCGGTGACCACCATCAAGAGCCTGGCGGACTGCAGCTTCATGTACACCAGCCCGCGGGATGCGCTGGGCTACGCCACGCTGAAGCggctgcagcagcagaggatCCACCCGTCCCTGTCCCACAGCGAGGCGCTGGCGTCGCCCGCCAAGGACGTGCTGTTCACCGACACCATCACCATGAAGACCGGCAGCCTGGACTCCCGGCTAACGCCACGCAGGTTCCTGAAGGCGCTGAGCTTTGCCTCTCTGGATAAAGAGGAGCTGCTGAGTCCCATCAACCAGAGCACGCTGCACCGCTGCTCCTCGGTGCGCTCCATGGTCTCCAGCGCCACGTACGGCTGCAGCGACGACTACGTTGGCCTGGCGCTGCCCATGGACATCAACGACATGTTCCACATCAGAGACTCCGCCTACTTTCAGCAGAGGGTCAGCCCGCCATCGGAGGAACGCAAACGCTTCCTCTTCGGCGACGGAGACGGCGACCGACCTCCTCTGCCGGCCCTGAAGCAGCAGTTCAGCATCTCGGAGCTGATCATGTGCCGCGGGGACACCCAGAACCACACGGTGGGTTCGGAGGAGACCGGCCTGCAGGAGCACACGGAGGAGAACTGCCTCTACTGCGTGGGAGCCATCGTCCTGGGATACCCCACGCAGCCGCAGATCAACAGCACGCACCCCCGCACAGACTATGTGGACTCTCCATCAAAAGATGCCACCGTCTGGAGGATAAAGGAGAAGTTCCCGTACGCCTTTGACGACATCTGCCTGTACTCGGAGGTCTCCTTCCTGCTGGCCCACTGCATGTTCCGCCTCACGTCTCGCCGCTTCATACAGGAACTCTTCCAGGACGTGCAGTTCATGGCGATGTACGAGGAAGCCGAGGCGATCCTGACGAAGCTCCCGAAAGCTGTGGAAGAGGACGCAGACCCGCCTACAGAGTCCTGA

Function

GO: NA

KEGG:

id description
K08267 RICTOR; rapamycin-insensitive companion of mTOR

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92280 lncRNA downstream 2737 41935506 ~ 41936244 (-) True G68902
TU92305 lncRNA downstream 10950 41927734 ~ 41928031 (-) True G68927
TU92522 lncRNA downstream 35359 41902901 ~ 41903622 (-) False G69078
TU92524 lncRNA downstream 35359 41902901 ~ 41903622 (-) True G69078
TU92296 lncRNA downstream 74557 41863776 ~ 41864424 (-) True G68918
TU92552 lncRNA upstream 16633 42038990 ~ 42039465 (-) True G69094
TU92292 lncRNA upstream 17503 42039860 ~ 42042664 (-) True G68914
TU92303 lncRNA upstream 22559 42044916 ~ 42089920 (-) True G68925
TU92297 lncRNA upstream 67716 42090073 ~ 42090529 (-) True G68919
TU92562 lncRNA upstream 90435 42112792 ~ 42113892 (-) False G69104
XM_039804057.1 mRNA downstream 56968 41867239 ~ 41882013 (-) True LOC120561104
XM_039804056.1 mRNA downstream 80483 41837626 ~ 41858498 (-) True LOC120561103
XM_039802475.1 mRNA downstream 123075 41796261 ~ 41815906 (-) True pold2
XM_039802497.1 mRNA downstream 342071 41588921 ~ 41596910 (-) True bag4
XM_039802519.1 mRNA downstream 356629 41572144 ~ 41582352 (-) True LOC120560239
XM_039804060.1 mRNA upstream 11866 42034223 ~ 42047509 (-) True LOC120561108
XM_039802472.1 mRNA upstream 56229 42078586 ~ 42094518 (-) False LOC120560203
XM_039802471.1 mRNA upstream 56229 42078586 ~ 42094518 (-) False LOC120560203
XM_039802470.1 mRNA upstream 56229 42078586 ~ 42094518 (-) True LOC120560203
XM_039802501.1 mRNA upstream 75970 42098327 ~ 42107117 (-) False rnf34a
TU92301 other downstream 9802 41928488 ~ 41929179 (-) True G68923
TU92275 other downstream 109848 41752536 ~ 41829133 (-) True G68897
TU92285 other downstream 156819 41754872 ~ 41782162 (-) True G68907
TU92249 other downstream 537080 41380388 ~ 41401901 (-) False LOC120560231
TU92377 other downstream 861516 41076005 ~ 41077465 (-) True G68985
XR_005639438.1 other upstream 76429 42098786 ~ 42107121 (-) False rnf34a
XR_005639437.1 other upstream 78018 42100375 ~ 42107122 (-) False rnf34a
TU92299 other upstream 85273 42107630 ~ 42116261 (-) True G68921
TU92564 other upstream 90435 42112792 ~ 42114159 (-) False G69104
TU92567 other upstream 108254 42130611 ~ 42132581 (-) True G69105

Expression Profile