RNA id: XM_039804062.1


Basic Information

Item Value
RNA id XM_039804062.1
length 2481
RNA type mRNA
GC content 0.61
exon number 11
gene id LOC120561110
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42111748 ~ 42136339 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGAGGAGCCGCGGCTCGTTCCGCCATGTTGGTATTCTCCGGTGTTAGTGAacgatgagagagagagagagcggccaTGGCCTTGTCACTGAGCGGAGACGAAGAGGAATATGATTCCGAGGGCGAGCAGCAGCGGGCGGCCAACCGGCCGAAGCCGAAGGCGGGGCCATCGGCGGCGGTGAAGCTGCCGTCCAACCGCAGCGCGTCGGGAGCCCGGCGGCGGCGGACGCGATGCAGGAAGTGCGAGGCGTGCCTCCGCACCGAGTGCGGCGAGTGTCACTTCTGCAAAGACATGAAGAAGTTCGGAGGACCGGGACGCATGAAGCAGTCCTGCATCATGAGGCAGTGCATCGCTcCGGTGCTGCCTCACACGgcggtgtgtgtggtgtgcaaaGAGGCGGGAAAAGAGGACACGCTGGAGGACGAGGACGACAAGTTCAACTTCATGTTGATGGAGTGCTCCATCTGCAACGAGATCGTCCACCCCAACTGTctcaagGTGAGCGATGCGTCCGGAGTGGTCAACGATGAGCTCCCTAACTGCTGGGAGTGTCCCAAATGCAACCACGCGGGGAAGAGTGGGAAACAAAAACGGGGTCCAGGCTTCAAGTACGCGTCCAACCTCCCGGGCTCTCTGCTGCGGGAGCAGAAGCCCGCCAAGGAGGACGCCGCGGACGCCACGGCCGCCACGGCCGCCGCCACGGCCGTGTCTGCAGCGCGGCGCCGTCCGGAGAGAGACGAGACGCCGCGGTCCAGAGGCGAGGACCCTCAGCCGCGGCCCCAGCCGCTAGCGCCGCTGCTACCGCTACCGCTACCGCTGCTGTCCCCGCGGCCGCGCCCCGAAGACAagctgaggaagaagaggaagctgTTCGACGATGACGAGGAAGAGGAGCTCAGCGGGAGGAAGAAGGAGAAGTGTGACGAGCCGTATTTCTCCAAACTTCTGCACCAGATCAAGACCGAAGAGGAGGACCAGGACGCCGACGAGGAAGAGGACGGAGACGAAGGGCGGGAGCGCCGCTTCCGCAGCGGCGCGGAGACGAACGGGAGCCTCGGAGACGAAGCCGAACCGGACGACAAGGACTCGAGGAGCGCCCTGCTGCACGCGTGCGTCCGAGCGGCGGCGGCGGTCGGCGACAGCGACCAATCGCTGTGCAGCTCGCCGCGGGCCGGCCCCAGCAGCGAGGCTGGCAGCGAGACGCAGGAGAGAGGCCCGCCGCGCCCAAAGGCTCGCCGCAAACGGCGGTTAGCCAACCGCGAGCTGAGCCGCGAGCTGAGCCGAGCGCTGAACTCAGAGATCCAGGAGACGGAGAACTGCCTCGCCAACGAGAACCGGCAGCCGCTCAAAGTGGAGCCGGAGACGGAGAACGGAGAGACAcacaggttacacacacacacacacacacacacacagacacaggttacacacacaACCTGGAACAGATgGTGCTGTGATAAGAGACTGTGGACTAAGATCGATCTGAACCGCTGCACGTCCATCACGCCTCTCATGCTCAGCGGGATCATCCGGCGCCAGCCGCTCGCTCTGGATCTCAGCTGGACCAACATCTCCAAAAAACAGCTGAGCTGGCTCATCAACAGACTGCCAGGTCTGCGGGTGTTGAGGTTGTCGGGCTGCTCCTGGGCCGCTGTGTCGGCGCTCTGCACCTCCAGCTGTCCCCTGCTGTGCTCGCTGGACGTCCAGTGGGTGGAGGGGCTCAAAGACGCTCAGATGAGAGACCTACTGTCCCCGCCCACAGACAACAGACCAGGTCAGCTGGATAACCGCTGCAAGCTGCGTAACGTGCGGGACCTTCGTCTCGCCGGGCTGGACATCACGGACACGTCCCTGCGTCTCATCTGCCGCCAGATGGCGTCTCTGTCCacgctggacctgagctactgCAACCACATCAACGACCAGTCGGTCAACCTGCTGACCGCCGCCGGGACCACCACCAGAGACTCGCTGATGGACATCAACCTGTCGGTGTGTAACCGCGTCACGGACCACTCCCTGACCTTCTTCAAGCGCTGCGGCAGCATCTGTCAGATCGACCTCCGCTTCTGTAAGCAGGTGACGCGCACGGCGTGCGAGCGCTTCATCGCCGAGATGTCCGTGAGCGTCCCGTTCAGACTCACGGAGGACAAACTGCTGCAGAAGACCTGCTAgtccccacgcacacacacacacacacacacaacgcacacacacacacacacacacacacacacacacacacacacacacacctccgcaCTTACAGTATATTATGGGATGGGATGTGTCTCATTTTACCAGGGCTGTTCTCAATTGAAGAGATTCTGAGTCGACTATCACTCAGTCAACTGTCTGACTGAtccattagttgatttaatcgacagatctgtaaatcagagtttctccactaagagtcgtgttaaaagcaccactttaattcttgtgtttaccagagatgagctcgtacggtTCTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92297 lncRNA downstream 21219 42090073 ~ 42090529 (-) True G68919
TU92303 lncRNA downstream 21828 42044916 ~ 42089920 (-) True G68925
TU92292 lncRNA downstream 69084 42039860 ~ 42042664 (-) True G68914
TU92552 lncRNA downstream 72283 42038990 ~ 42039465 (-) True G69094
TU92293 lncRNA downstream 118257 41988436 ~ 41993491 (-) True G68915
TU92572 lncRNA upstream 73599 42209938 ~ 42223138 (-) True G69110
TU92596 lncRNA upstream 229690 42366029 ~ 42443845 (-) True G69127
TU92599 lncRNA upstream 259742 42396081 ~ 42413217 (-) True G69129
TU92602 lncRNA upstream 289413 42425752 ~ 42495934 (-) True G69131
TU92622 lncRNA upstream 361226 42497565 ~ 42536958 (-) False G69140
XM_039802504.1 mRNA downstream 4627 42098771 ~ 42107121 (-) False rnf34a
XM_039802503.1 mRNA downstream 4627 42100327 ~ 42107121 (-) False rnf34a
XM_039802501.1 mRNA downstream 4631 42098327 ~ 42107117 (-) False rnf34a
XM_039802500.1 mRNA downstream 4632 42098327 ~ 42107116 (-) True rnf34a
XM_039802472.1 mRNA downstream 17230 42078586 ~ 42094518 (-) False LOC120560203
XM_039802495.1 mRNA upstream 39137 42175476 ~ 42179298 (-) True LOC120560222
XM_039802485.1 mRNA upstream 72862 42209201 ~ 42212702 (-) True LOC120560212
XM_039802496.1 mRNA upstream 105397 42241736 ~ 42256884 (-) True hpdb
XM_039802434.1 mRNA upstream 126086 42262425 ~ 42271211 (-) True LOC120560191
XM_039802513.1 mRNA upstream 522017 42658356 ~ 42662019 (-) True LOC120560234
XR_005639437.1 other downstream 4626 42100375 ~ 42107122 (-) False rnf34a
XR_005639438.1 other downstream 4627 42098786 ~ 42107121 (-) False rnf34a
TU92260 other downstream 37768 41836547 ~ 42073980 (-) True G68883
TU92301 other downstream 182569 41928488 ~ 41929179 (-) True G68923
TU92275 other downstream 282615 41752536 ~ 41829133 (-) True G68897
TU92624 other upstream 398928 42535267 ~ 42536075 (-) False G69140
TU92678 other upstream 636652 42772991 ~ 42809622 (-) False LOC120561114
TU92739 other upstream 833745 42970084 ~ 43014065 (-) False G69229
TU92741 other upstream 833745 42970084 ~ 43014065 (-) False G69229
TU92743 other upstream 865916 43002255 ~ 43003347 (-) False chek2

Expression Profile