RNA id: XM_039804070.1


Basic Information

Item Value
RNA id XM_039804070.1
length 1247
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC120561120
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 43301619 ~ 43304446 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAGTTCTGTTGTTAATGATGTCTggtgtcttttctctctctctattgtaTCTTCTATCATCTCTCCAGACTCTGTCAGGCTGGTGAATGGGACCAGTCTGTGCTCAGGCAGACTGGAGGTGAAGACTAACCAGTCTACCCAGCGctggtcctcagtgtgtgaagatGACTTTGACCAGCAGGATGCAGAGGTGGTCTGTAGGGAGCTTGGCTGTGGGGCTCCTTCAGTCCTCCAGGGGGCACTCTATGGAGAAGTGGAGCCTCCAATGAGGACCAAAGAGTTCCAGTGTAGAGGCCATGAGTCTGCTCTCCTGGACTGTAGAAGCTTAGGCTCAGATAGAAACTCCTGCTCACCTGGAAAAGCTGTTGgactcacctgctcagAGCCTGATGCTGTCAGGTTGGTGGGAGGAGCCAGTCGCTGTGGAGGAACACTGGAGGTGAAACATAAAGGAGAATGGAGACCAGTGGTTAGCAGTTACTCTGGCTGGACCCTGAAGACAGCAGCTGCTGCCTGCAGAGAGTTAGACTGTGGCTCTGCTGTTTCTGTAGGAGAGAGTAATGAGTCCTACGACAGATCTGTGTGGAACATCTGGTCTTACTGTGTTGAGTCTGGATCTGTTCTGAGGGAATGTGCAACATCATCATATTACTCTTCCTCCTTACTTAATCTCACCTGTTCAGacctgctgctgcagcccaacATCTCTGTGTCCTCCTCCATGGTCGGGGTCTCCGAGGAGGACCAGCAGGAGGTGTTCCAGGTGTTCTGGGGCTCCAACTTCACCATCAGCTGCTCCATCCAGCCACAGTACCCAGGAGGCTCCTTCCAGCTCACCTTCACCTCCTCCGACTCTACACACAACTACACCCAGCCAGCTGTCAATCACTctgcccacttcctgtttcctgctgcAGAGCCCGCCCACCAAGGAAGCTACAGCTGTGTTTATCACCTCAATGTTTTCTCTCATAACTTCTCCTCTGAGAGCCGTGTGCTCTCTCTCAGCGTCATGGATCCGAGGCCCTTAATCATCAGAGCGATCCTCCTGCCACTGATTCTGCTGGTGGAGAACATTGTCCTTTACTTCTACTGTAGGGCCAACAGGGGGCAGCTGCCGTGCAGACAGAAGAACATTGATCGGGGCGGCCTTTAGCTCACCCATTAAGAGCTTTCGCctcatgtaggctgagtcctgcagcggcgcagggttcaaatccaacctgctgccctttactgtgtgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92913 lncRNA downstream 25847 43274479 ~ 43275772 (-) True G69342
TU92810 lncRNA downstream 74716 43225935 ~ 43226903 (-) True G69273
TU92808 lncRNA downstream 75895 43203661 ~ 43225724 (-) True G69272
TU92777 lncRNA downstream 107227 43166121 ~ 43194392 (-) True G69251
TU92804 lncRNA downstream 148509 43151862 ~ 43153110 (-) False G69271
TU92910 lncRNA upstream 81712 43386158 ~ 43396705 (-) False G69339
TU92909 lncRNA upstream 91874 43396320 ~ 43396705 (-) True G69339
TU92912 lncRNA upstream 95615 43400061 ~ 43409122 (-) True G69341
TU92962 lncRNA upstream 179664 43484110 ~ 43484519 (-) True G69371
TU92964 lncRNA upstream 205502 43509948 ~ 43511370 (-) True G69372
XM_039804069.1 mRNA downstream 50307 43223477 ~ 43251312 (-) True LOC120561119
XM_039802524.1 mRNA downstream 122630 43143388 ~ 43178989 (-) True pomt1
XM_039802523.1 mRNA downstream 160066 43105342 ~ 43141553 (-) True snapc4
XM_039804068.1 mRNA downstream 202454 43076230 ~ 43099165 (-) True card9
XM_039802527.1 mRNA downstream 276569 43002497 ~ 43025050 (-) True chek2
XM_039804071.1 mRNA upstream 3902 43308348 ~ 43310847 (-) True LOC120561121
XM_039802458.1 mRNA upstream 176515 43480961 ~ 43528118 (-) True LOC120560199
XM_039802460.1 mRNA upstream 176515 43480961 ~ 43527562 (-) False LOC120560199
XM_039802459.1 mRNA upstream 176515 43480961 ~ 43527562 (-) False LOC120560199
XM_039802461.1 mRNA upstream 176515 43480961 ~ 43512080 (-) False LOC120560199
TU92812 other downstream 50324 43250758 ~ 43251295 (-) False LOC120561119
TU92775 other downstream 82725 43211019 ~ 43218894 (-) True G69249
TU92756 other downstream 122648 43173165 ~ 43178971 (-) False pomt1
TU92794 other downstream 212792 43077852 ~ 43088827 (-) False card9
TU92737 other downstream 283368 43004586 ~ 43018251 (-) False chek2
TU92928 other upstream 67321 43371767 ~ 43380599 (-) True G69356
TU92966 other upstream 236797 43541243 ~ 43546558 (-) False phf19
TU93018 other upstream 376030 43680476 ~ 43709236 (-) False LOC120560198

Expression Profile