RNA id: TCONS_00076247


Basic Information

Item Value
RNA id TCONS_00076247
length 3484
RNA type mRNA
GC content 0.56
exon number 6
gene id XLOC_038759
representative True

Chromosome Information

Item Value
chromosome id NW_018394426.1
NCBI id KZ116034.1
chromosome length 33615
location 1250 ~ 8270 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

actctctcagaGCGACAAGACGGAGCCGCAGATGAGCAGtGATGGCGTCGTCTGTGGAGGATCAGCAGCTCCAGCAGGAGGAAGCAGAGAGTGTTAAAGATGTGCAGTCACATTACCTGCGCTGTCCTTCACCcagtttctCCATGATGTCAGACCGTTTCTCCACGGTGTCGGACCGGTTCTCTGTCATCTCGGGTTCTGAAGCTGAAAGCATCTTCATGGAGCCCATTCACCTGTCGTCCACCATCGCTGCCAAGAAGATCATcagtgaagagCTGCCGCCCAGACCCGCTCGCGTCTCCTCACCCCCGGACAGCGCTCTGGAGCCGGCGCAGCAGCTGATGGTGGAGGATCTGTACTCCAGGGTGCAGGAGCTGCTGGACGAGCGCAGCCTCTATAACACACCCTGCGTGCTGGACATCCAGAGGGCGCTGCTGCGAGACCGGCTGGAGGCGCCGCTCAGCCCTGTGGACGAGGTGTGGCCGAATGTGTTCATCGCTGAGAAGTCAGTGGCTGTGAATAAAGGCCGTCTGAAGCGTCTGGGCATCACTCATGTGCTGAACGCGGCTCACGGTACGGGTGTCTACACCGGCCCGCTCTTCTACTCCGGCATGAACATCCACTATATGGGCATCGAGGTGGACGACTTCCCGGACGCAGATATCTCCCCTCACTTCCGCTCGTGCGCAGAGTTCCTGGACGACGCTCTGCTCACACACAGGGGTAAGGTGCTGGTGGACTCGATGATGGGCGTGAGCCGGTCTGCGGTGCTCGTAGCTGCTTACCTGATGATCTTCCAGAACATGAGCATCATGGAGGCGCTGCTGGAGATCCGGAAGAAACGAGCCATCAGCCCCAACGAAGGCTTCATAAAGCAGCTGCGGCAGCTCAACGAGACCCTAATGGAGGAGCGGGACGAAGACGATGACGAGACGCTCAGCCAGTGCTCTGTGATCGACGCCCGCGGCCGGCTGGAGGAGCAGGAGAGTGTGTTCGGGGTGAAGGCGGACTCCATcatggtggaggaggaggaggatggagGAGGCAGCGTGATCAGCAGTGTTGCCTCTTCAGCTGCCGCCGCCGCTCTCCGAGCTGGAGTTCAATGTGGATCCCAGCAACCCAACATGCAGCAGCCAGCAGACCAGCCCTCGCTGCCGGGACAGACCCGCGAAGATGAGGATGGGGATGTGGACCGCATGATCCTTGAGTGGCAGAAGCGCAATGAGAAATACCAGAGTGAGGACTGGTGGGAGGCGCAGCTGCTGTGCGAAGATGAAGATGACGGAGAGGATAAGACACAGCGCGCCGTCCGGCCAGACGACCTGGAGAGTGTGACTAGTGAGGATGTGCGGATGGTGAAGGAGCGCATCGGGCGGCGTCCCCGCAGAGCTGCATCACTAGCCGGATCCACTTCCAGCTGCAGCAGCTACGTAGACCTGTGGAAGCAGCGGCTGCAGGAGCTGGAGGAGCAGGCGGCTGCACGACACCGCCTCCAAGACCAGGACACCAGCAGCGAAACACAACAAAAGAAGATCGACGACGATGTGCAGAGCATCCTCTCCGACAGCAGCTCTATGTACAACTTCTGCAAGAAGAACAAGGAGAATCTAACACCTCTGGAGAGATGGAAGATCAAGCGCATTCAGTTCGGCTGGAATAAGAAagagaacgcagagaacggagaGCAGAGCGAGGCTGAACCGGCGGCAGCTCCTGATCTGGAGGACGTCAACCTCACAGCCTATCAGACCTGGAAGCTAAAGCAGCAGAAGAAGCACGGCGGTGAAGAGAACAAGGAGGAGATCCTGCAGATGAGCCGAGGGGAGGACACGGCCACCGCCAGGAGGCGGCAGCGGAGGGAGGAGGTGCTGGAGCGCAGCCGCAGGAACCTGCAGGAGAGCCAGTCAGTATGTGGCTGGGAGACCGAGAGCGCTCTGAGCTCCAGCATCCCACTGTCTGCATTCTGCGCCGGAGCCTTTCCATCCGCCAGCGTCTGCGGAGACGACAGCATGTCTGTGCTGAGCGGGAGGTCCTCAGTGCTGTCAGGGCGAAGCACTCGATCTCTACCTCCTGCTGTCCTGGAGACTCCTGCACCACCCACTCCGGTGCTCGGGCCTAACGGAGAGCAAATGGTGAACATCGCCAACATCCAGAACTGGATCGCCAGTGTAGTGAATGAGACGCTCCAGCAGAAGCAGACGGAGATGCTGATGGGAGCGAGTGTCGCCCCGTCCCGAGCCGGATCCGTGTTCAGTGCTGGACGAGGAGTGGATGATGATAAATCCTCTGTTCTCAGTGGACTATCGGCCTCCACTGGACTGTCCCGCAGTAGGGCTGAATCTGTGGTGTCTGTGGGAGCGAAGGCCCGGTCAGTGCTGTCGGCCGCAGGTAGAGCTGAATCTGTGTTTTCTGCTGGTGGAGCATCTCAGCTGTCCTGTGGCTCGCGCAAAAGCAAGATTACCACCACAAGTGTGCCGCTGTACAGCCTCTTCCAGGACCAGGTGAACCTCCACAAGCTGGACACCATGGAGAAGGAGATCAAATCTGACATGCGGGACAAGATGGCCTCATACGAGATCAAGAAGATCACAGAGGACAACAAGCGCAGCACACTGTACAAGAAGAAAAAGCCAAAGGAGGATGACGAGGATGTAGATATAGCCAAGTCCAATGGGTTAGAGGAACTGGAAGCCCGTACTTGTGAGAAACCAAAACCCAAAAGAGATTACGGGCGTTCAGGAATACTGAACCTTCCGGCGTCAGCCAACAACCCGACCAGCAGCATCGATGAGTGGCTGGAACACGTCAGACCTCCGTCCAGCAAACCCAGAGTTTACGATGGCGACAGTGGTCCCATACGCATGTCTCGGCCAGCCTACGAGGAGCTGCAGGAACCTTCAGGGCTGGACTTTACGAGTCGCAGGAGCTCCGTTTCAGTAGAGGTGGATGAAGAGGAGGATTACAGCTTCAGGTTTTCCTCCAGGAATTGTGCTGATGATGATTTGGATCCAGAGTTGAGCTACTCGTCTCGCAGATCTCCGTCCTTTAACGGTTTAAGCGAATCTACGAGTTTCGCAAGCAGGAGGTCTTACTCTAGATATGAGGACGAGGAGCGGAGCAGCTTCCAGAACCACTCCATCAAGCAGAAATCATCGGTGTATGAGGACTCTGGGAGGACTGCTGGATCCAGACGGGACGAGGAGGAAGATGAGGAAATATCTGCGTTTATTGCTCAGATTAAACAGAGGGCGAGAGCGAGAGTCGCGGAGGAGATGGAGGACGATGAAGTGCTGACCGCATGGAGGAAGCAGGAAGAGTCAAAGTCACATGATCACAAATAATGCcaaatgatttattaaatcaCCATCTGTGCCAGAAAAGATAAAGTTGTCATAATGTGTATAGATTAGGGCTGCAGAATACATTGAAGAGTTCACGACAATAGATTATGCAGAGAAGTGCaataaataatgttcatttc

Function

GO:

id name namespace
GO:0014866 skeletal myofibril assembly biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0030017 sarcomere cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140513-1 Predicted to enable protein tyrosine/serine/threonine phosphatase activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be located in sarcomere. Is expressed in optic tectum and somite. Orthologous to human STYXL2 (serine/threonine/tyrosine interacting like 2).

Ensembl:

ensembl_id ENSDART00000167359

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00076248 mRNA downstream 11985 20255 ~ 22887 (+) False XLOC_038760
TCONS_00076249 mRNA downstream 11985 20255 ~ 23269 (+) False XLOC_038760
TCONS_00076250 mRNA downstream 11985 20255 ~ 23752 (+) True XLOC_038760
TCONS_00076251 mRNA downstream 18443 26713 ~ 27407 (+) True XLOC_038761

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_06352251_06359190.mRNA True 5258 mRNA 0.47 6 CI01000299 6351435 ~ 6360203 (-)