RNA id: XM_026922823.2


Basic Information

Item Value
RNA id XM_026922823.2
length 1715
RNA type mRNA
GC content 0.45
exon number 8
gene id vegfab
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11238935 ~ 11259412 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGTGCGCTGCCCGAGTGACCGACAGTTGAAACCCCTCGAGCGCACGGCTTTAGCTTGGCGGTGTCACGTCTCCGactcaaagattaaaaaaaaaattacaagaaaaGAAATTGCTGATAAAAACTGCTTGAAACCCACCAAGAAGCGGATTCcgaagttgattttttttcttcagcagcaGAAGATAGAGACCTACCCGGTTTTCCCGGGCACTGAGGAATTCTGCGCGAGGGGCTGCCAGGCTGTGATtcactgagccaccacagcTCAAAGTTACATCAGAGCCCGACTTTCCCCTCGAACTCGTATAAAACTTAACAGCCGAGTGACAAGTCAAATCATGGGATTATTAGCCTACTGTGATGTGGATTGTAAAGCCGTTTGAGCAACAGCTCAGTTTGCGTTGGGACCATGTGAGTGGATTCGCGTCGTGGCTTCTGACGTTTCTGGATATTTTGAAAATCATCGGCAACAGTTGAACCCGACGTCTTGTCCTTCCTTTTCATCAGGTGTCTTGTCTCGTGGGACCAAAAATGAGACTTTAGCCTGATTAGTTCTCCTGACCCCCACCGTTAGGAAGCTCCATCCATGTCTGCCCTGTTTTCTGAGACTCTCTCTGATGCTTTTGAACAAGTTCGCCTATCATACGATAGGATTTTAACCAGACTTTCGCGTTGCGCCATGTCAGTCATGAACTTGGCCGTGCGCTTGTTGCAGTTGTTTTGCGTGACGCTCCTATATTTCTCAGCTGTCAAGAGTGCCTATATCCCCAAAGAGAATGGAGGCAGCACAAATGAGGTCGTGCCCTTTACTGAGGTCTACAATAAGTCGATGTGCCGGCCACGGGAGATGCTGGTGGAGGTCCATCAGGAGTATCCTGATGACATTGAGCACATTTTCATTCCGTCCTGTGTGGTGCTTATGCGCTGTGCTGGCTGCTGCAATGACGAGATGTTGGAGTGCACACCCACTGCCACCCGCAACATCACCATGGAGgtACAAAAATTAAAACCCCTGCGCATCAAACGCAACTACCCAATGAGTTTTGCAGAACACACTGAATGTGAatgcagagtaaagaAAGACATACAAGATAAGACAGAGAAAAAACCCCGGAAAGGCAAGGGGAAAGGTCAAAAGGGAAAGCGAAAGAAAAACCGCGACAAAACGCGGGATTTTACTCACTGTAAACCATGCTGCAGTACATGTTCTGAGAGGAGAAAAAGGCTATACATTCAGGACCCTGAAACGTGCCTGTGCACCTGCAAACACTCAGAGGCTGACTGTAAGCAAAAACAGCTCGAACTCAATGAGAGGACTTGCAAATGCGACAAGCCAAGGAGATGAGCAGGATCAGcctatatatgtttttttctgaataaagGCATAAACACTAATAATGAATAGCACCGCACTTTGAACCTTCAATTTTAATCTGTCAACCCCGGACTCTTGAAGCATTCCCCTCAActgacagagagtgagtgagcaaGTCTTCCCCCTGTAAATTTCACCATAAATGTGTATATTGAGTAAAGATTTGAGCAAAGACTGAAAGAACAAGTAGAGTTGCTGCTAAATTTCTGCCTAAGAGGATTGGCCATGTCATTCCCCCAGCtgatcatttctgtttttcagtttgcCTCAAAAATTGATTTTCTCTGCATATATAAGGGCTGTgtggtttctaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0016310 phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332800 lncRNA downstream 55093 11183066 ~ 11184143 (-) True G280818
TU332799 lncRNA downstream 57185 11179931 ~ 11182051 (-) True G280817
TU332792 lncRNA downstream 66790 11169886 ~ 11172446 (-) True G280812
TU332738 lncRNA downstream 159749 11079168 ~ 11079487 (-) False sobpb
TU332613 lncRNA downstream 308256 10930738 ~ 10930980 (-) True G280652
TU332834 lncRNA upstream 379 11259791 ~ 11259991 (-) True G280841
TU333037 lncRNA upstream 99950 11359362 ~ 11359636 (-) True G281021
TU333091 lncRNA upstream 302313 11561725 ~ 11562064 (-) True G281057
TU333104 lncRNA upstream 323981 11583393 ~ 11583637 (-) True G281070
TU333109 lncRNA upstream 329591 11589003 ~ 11589687 (-) True G281075
XM_034312991.1 mRNA downstream 145060 11079173 ~ 11094176 (-) False sobpb
XM_026922693.2 mRNA downstream 145418 11079173 ~ 11093818 (-) True sobpb
XM_026923844.2 mRNA downstream 162474 11067737 ~ 11076762 (-) True mapre3b
XM_026923287.2 mRNA downstream 173289 11053196 ~ 11065947 (-) True tmem214
XM_034313320.1 mRNA downstream 188630 11042187 ~ 11050606 (-) True agbl5
XM_034313377.1 mRNA upstream 69616 11329028 ~ 11344755 (-) True rsph9
XM_026923791.2 mRNA upstream 76656 11336068 ~ 11344755 (-) False rsph9
XM_026923140.2 mRNA upstream 96648 11356060 ~ 11380183 (-) False tmem63a
XM_026923138.2 mRNA upstream 96648 11356060 ~ 11380183 (-) False tmem63a
XM_026923139.2 mRNA upstream 96648 11356060 ~ 11380183 (-) True tmem63a
XR_004579975.1 other downstream 232093 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 943115 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1616617 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 2030673 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2429898 8809220 ~ 8809338 (-) True LOC113532431
TU333108 other upstream 326892 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 398478 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1321511 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3914936 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5699112 16958524 ~ 16964887 (-) True phf21b

Expression Profile