RNA id: TU333108


Basic Information

Item Value
RNA id TU333108
length 1158
RNA type TUCP
GC content 0.41
exon number 3
gene id G281074
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11586304 ~ 11588024 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAGGATTTAATTTACACCTTTAATTCTCCCCACACTCCAAATacacaaagacaaataaaacataacaaaatatgttgactggatgtttttcaataaaaactgtagacagtcagaaaaaaaagacattagcTATACAGATTATGTTCAAtataatagataaaaaaaaaaaaaaaagcttctaatGTGCTACGGCATTGGGATGCAGGGGTTTTACTCGAGCCAGGCGAGACAGTCCTAATCGTAGACCAAGTCCAGGCGACTTCACAGAAGGACTCTGACATGAGCTAGGGCTCCTTCCTACCAGACCTGATaacatccaaaaaaataaaaataaaaaaattaacagaacATTTGCTTATGGTCTCAGATATagaatttaatattcagtatcTGTGTTCTAGTCCCTACAACTATTTCTTGGGTAAACCATCTGTTGGTTTTGTAGATAAAGACTACAGAATAAAAActagaggtaaaaaaaaaaaaaaaggtttttcctGCTAGGTGGTTTGTGTATCAGGGCACAGCTAAAACTGAATGACCTACTGTGCATTCAGATTCAGACAATAGGAGACATCCATTGTAGAGACAGCCTGATGTCTGGATAAGATTTTGATCAACTGCACAATATTCACTTTAAAGTAGTCGTCTTCCTACTCATTCTACACACACGTTCTACACACGCCTTACCAGGAGGAGTCCACTTTGGCGTTCTGCCCCCGGCAGGACTGGTATGGAGAGCAGATTTAGTCACAGGAGGAGTGGTGGGAGGTCTGTTCATTGCAGAGAGAGGCTGAGCAGCAGCTGGGCTCCTGACTCCTGGactgtgtgctgtgtttttgaCTCTGGACTGTGGTTTGGTTTTAGCTGGTTTCGTTGGCTTGTTCTCTTTCTTAACAGCTTTGGGGgatttctttttctcactcttggcctttttcattttctctcgtTTTCTCTTCACTGTGTATTCTTCATCCTCACTCTTATCCAAGTCACTGAACTCCGAGTCACTCTCGGGTGTGTTCTGAGGTCTGTAGTCTTCGTCTTCTTTGTTCTCTTTCACGTCCTGTAAGGCACACCTCTGTTGCTCTGTCGCTTTTTGGGACTTTCTCTTTGTGCATATGGCAGATGAGGGTGTCTGCTCACTGGTGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333104 lncRNA downstream 2667 11583393 ~ 11583637 (-) True G281070
TU333091 lncRNA downstream 24240 11561725 ~ 11562064 (-) True G281057
TU333037 lncRNA downstream 226668 11359362 ~ 11359636 (-) True G281021
TU332834 lncRNA downstream 326313 11259791 ~ 11259991 (-) True G280841
TU332800 lncRNA downstream 402161 11183066 ~ 11184143 (-) True G280818
TU333109 lncRNA upstream 979 11589003 ~ 11589687 (-) True G281075
TU333143 lncRNA upstream 119666 11707690 ~ 11710984 (-) True G281102
TU333155 lncRNA upstream 151706 11739730 ~ 11752892 (-) False dusp16
TU333441 lncRNA upstream 445072 12033096 ~ 12036362 (-) True G281362
TU333459 lncRNA upstream 505833 12093857 ~ 12094059 (-) True G281373
XM_026923559.2 mRNA downstream 94035 11487504 ~ 11492269 (-) False foxm1
XM_026923557.2 mRNA downstream 94035 11487504 ~ 11492269 (-) False foxm1
XM_026923558.2 mRNA downstream 94284 11487504 ~ 11492020 (-) True foxm1
XM_034313375.1 mRNA downstream 116668 11462894 ~ 11469636 (-) False pgm3
XM_026922681.2 mRNA downstream 116673 11461887 ~ 11469631 (-) True pgm3
XM_026923415.2 mRNA upstream 1789 11589813 ~ 11596577 (-) True ada2b
XM_026923285.2 mRNA upstream 8744 11596768 ~ 11601405 (-) True atp6v1e1b
XM_026923353.2 mRNA upstream 22109 11610133 ~ 11639731 (-) False snap91b
XM_026923355.2 mRNA upstream 22109 11610133 ~ 11639731 (-) False snap91b
XM_034313280.1 mRNA upstream 22109 11610133 ~ 11639731 (-) False snap91b
TU332827 other downstream 326912 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 579161 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1290183 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1963685 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 2377741 9207351 ~ 9208563 (-) True G279415
TU333129 other upstream 69866 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 992899 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3586324 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5370500 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 5515541 17103565 ~ 17103637 (-) True trnar-ccg_5

Expression Profile