RNA id: TU336422


Basic Information

Item Value
RNA id TU336422
length 5618
RNA type TUCP
GC content 0.39
exon number 5
gene id phf21b
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16958512 ~ 17027865 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCTCATGCACTGTGTTaccgcacgcacgcacacacacacacacacacacacacacacacaggataacATGTTTCCAAGCTAGACAAATAGGATCTGAGCTCATGTAATGCAGAAGGAATATCAATGTACATGCAGGTCTGCAGTGCCATTTTGGTCACGTGCTTGTTCATGCTTTTAATGAAGCACTTAATGTAGTACAGAtctcaactgtgtgtgtgtgttttgtgtttcctaaggcacacacacacacacaccactgtccCCTGTTGTACTGCTCTGctcatttttcagttttacacCCAAGTCATGATTACCTAATTATCAAGGCCTTCATCAAACACAAGCTCTTCTTGAATCATGGAGAGCATGAAGGTGTTTGCATTGCCACGCACAATATGAATAGAATACACTCTAATGCTACATCTCTATACTACATATTAGATCAGTTACTATAGGTCTAACTTTAAAACTACACCTAATTACAGTGTCACTGGTAGTTCTCCACTGAAAGCTCTTTTGAGCAAGAGAATAGGCTTCTGTACCCAGGAAACTCTCCTACAAAATCTCTCTAAAACATgctcttttgttaaaaaaaaaaacagcagagacAGTGCTATAAAAAGAAGCACCTCAAGCTTTATTTCTGTGTGCTCAGCTTTGTTGCATGGCTATAATTGTAATCTAACCCATGAATAACCCTGTCTCTTCACTCTGCTAGCTACTAACTTATTCTCTGCTTCCTATTCACACGCCAGACTCTGAGGATCTGTGTTGGAAGGTATGTAGCTACTCTCGAGATTCTGTATGTGGAGGAGGAGGGGCCATAGGCTTTTTGTTATGATCTGTAACCTGTTGTTCATTGTTCTTGAAAAAGTTTCAAATAAGTAATGCTGTACTGTATACATTCGggctacagtatatatattcagatgtccagaaatgcatttaaatttaatcacTTACAAATGTTAAGTATTTAAAGgcattcaaatattaataagCATGTAATTTTATACTGACATAGACAGAAATAGCAATAACACAACACTATGTGTTTGTCACAAACTACACTcaatgtccactttattaggaacacttgtccacctgctcattcatgcacttATCCAGCCTATCAAGTGGcagtagtgcaatgcataaaatcatgtagataaaggtcaagagcttcagttaatgtttatcaaacatcagaatggggaggaaatgtgatctcactgaCTGTGACTATGGCAgagttgttggtaccagaccaggcgatgtttttccaatcttgaaCTGtcagtgagcctgtgtccactgtgacctcagattcctgttcttggctgacaggagtggaaactgatgaggtcttctgctgctgtagcccgtccacctcaaggttcgacatgttgtgctttctgagatgcttttctcttCGTCACAGTTGTAAAgcgtagttatttgagttactctaAAGTCTATTGAGCGTGAAAATCACAggaatactcaaaccagcctgtctgaccGTAGAAACCAtaccattctgatgtctgatgtgaacattaactgaagctctttacctgtatctgcatgattttatgcattttactGCTGGCACATGATTGGTTGACTGGACAGTTATATGAATGAGTGGTTGAATaggttttcctaataaagtatcAGTGAGTGTCTGCAATGTGAACATTTTGTTACTTTCTTAAAATAtttgtcattaaatattttaaattagtaTTTATTTGCTTACTCACAATTTTTGATGTTACTGATATTTGGTTTGTTTACTTACACTACCATGATCCATATAAAATCCGCCATCTTCAACTTCTTTGCCGTTTGTCTTTGTAGTGCTGATGTAGTGCGGTTTATGCCCAGGGGAGACGGATATTGATGAAAATGTTGTCATCTACACACATCACTTTTAAGCCACACAGGatcttaaacatttacatttaaatacataatgaatatgaatattacCGGAATGGTGAAATTCATTCATATACCATCCTCAAATGTGTAGCATGGGCTGATTGTAAAATAACAGAACTTACACCACTTAATTTAATATGCAATTTGATTGTCTTCTCAAAAAACTTACTGAAGCTTTTAAatgaggaagagtgtgtgtctgccaGAACTGTTAGATCTGATGTGCAGAAACATTCCCTATCTAAAGCCCAGATTAAAAGAATCAATCAAAGTAATATGTCAGGATAATAAGGTACTTCGCTTATCTTTAAAATCAGTCATCACTGCTGTTACTTTTCTGCCAGTACACTGAAGTAATACAGATGTACAGAGCAGGATGTTGATAACAGGGCTGTAAAGTGTGACTTATTTTGTGCATGATTGctgcaggaggagctggagcatGATGACCACTGTGCTGTGTGCAAAGAGGAAGGGAACCTTCAGCAGTGCCACAGCTGCACCCGCGCTTACCACCTAGACTGCTTACACCCTCCGCTCAAGTCCCCACCCAAGGGCATGTGGATGTGCCCTAAGTGCCAGAAGAAGGTTCTGAATAAAGAAAACTTGTCTTGGCCACACAATTTTGTTCAGTCTTACGTTACACACAAAACAGtgagagaggaggagaagagaagacTGATGAGGAGAAACAGTGAACTGAACAAAGAGTGTGCACACCTGAAAGAAGAAGACCAGAGACTCAGCAAATCACTCTTGAAATGCAGAGACGTGAAGGAACGTCTGCTGAGTCAGCAGAGGGAAACTCAGGCGTCTCTGGAACGTCTCCGAGCCCTAATCCGCCTCATCCAGCGTGATCACATGATCCAGGTCACCATGACGGCCACCACCACCACTTCAGGGGGAGCAGCACTGCTCTCTCTGCCCTGGATCAAACCAAGCTCCACCAGCAGCACGAGCAGCTCCACAGCACCCCCTGCAGGGCCCTCCACACTGCTGCACAAGAGTGTGCTGCACTCCCAGGGCAACAACTGAACCCATCACAGGCAAAAACACTTTATTCATAACAACATACGTGCATTTCTTTTCCCACACAAGCTCTTCCCGAGCTTAATGAGAGATACTCACAATGGAAGCTGGAGAGTGAAATCTGGCCAATgtgggttttttcccccaagagcTGTATTGtcttaaggaaaaaaatatcaaaaaatgtaaagaaaaaaaatcaatactaaCTACAGTATATTCTTAAGTCAATTCATAAGTATTTTTTAAACCCAACACCTACAGTGcttaagagatttttttttttaacttattgtttttaatttactaaatgTTCTTGGCCTTAATGTATTTATGACAAATGAGCAGATAACCATGCCGTCATGAATACAGAAATTAAGTATTTTATGCGGctaaagcctttttttaaattacagttttcttttttaaagggGGGATACTTGTTCTACATATAGCGAGAGAGAACATTAGAGTAGCGGTAGTTAAACGAGACATATGAGACAGAGAGGACTGTACAGTGATCTATCCGAGTAGGAAAAGAAATTGTTCTCATTCTCCTAAGAACAACAATCGCCATAATAATTCAGGTGAAAAGGAgatgggaaagtggttttcattGTGTATGTACTTACGAGCATACGAGCCTTCAAACgaacacaaaaaaggaaaaaaaaaaaaaaaaaagagaataacttttttttcagtattaataGAGTTGAGATAAAGGAACAAAGTATTTAAGATGACTACAAAATTTAGCATTTCTAGTGGAGAATTTAGTATTTTCATGCGGATGCCTGTTCATAATTGTGAATTGAAGTATTGGAGAGAGGGGATTGTTGTACATATGTTGTATTGTTATAACAGGTCCTTCTGATTTTTCTTCTGTATTGTTACTCCAATCAGAGCCTCATCAATgatgtttctttctgtttcctttgcacTGACAGCAAAAGTGGACATTAGGAAGGGCCATTCAAGTTCCAATGAGTGTGTGCACCTATTGTCAAACccgttcttttctttctccagtATATAagatatgccaaaaaaaaacccttacatTTTTAAGCTGGGAGCTTTCCCATCTTTCACCATCGTCTTTATTATCTGTCTTGTCTGTATTTgtagtttttgctttaatgatgcCTTATTTCCTAATCGCCACATTGACATTATGTACAATTTCACATATTATTGCAAGGACACATCTGACTGTTGTGTCTGTTTggttatttcattttcttaatctGTGAGATGATCTAAATGAACACTGCCTCAAGAACAAGATTAGATAACGCCAGggtttattaaatatatcacattaaaatgagaaaacttACCTGGAATTAATTTTTATGAAAGGACAATTTTGTGAGTCACCTTTGCTAGTTTGTCTTCCTGTTCTTCTAAAGGATTTCTCAAGGTGCGCAGTTCTGACGTGGCCTGTGAGGCAGAGCTGCTTCTCAACCCGTGCAGAGGAAAAGCTGATCTGCCTTTGCTTTATGTCTATAGCTACTGATCAGCGTTCAACCCAAGTCAGCAGGGTCTGGGCCTGATCATGTTCCAGTGGAGCAGAGGACTTTGTTtccagaaataaaacagtgcaGGTCACTTGGTCTCGAACTGCGTTCAGTTCTGCTGGAATCACCCTGATCAAAGATTCCTAAATAACCATggcagattttaaaaagacaaacaactCAACACATGAGATATCCAGTATCATTATCTATTATCATTACACAAGGGCTTCACAGGTATGGGATATATGGATGTGGAAACATTAAGTGCATATCACAGATTCCTGACATGGTCTGTAGATTATTGTAAATTTAACAAATTGAGTCAGACCGGTGTGCACCAACCACGTAAGGAGTCGAACGTAAGGAATTACATGCATATCACCCACTGGCCCATAATACCCCCCACGTCATACATGCCTGACCTAAGGGATTAGCTCACAGGAAACTGCAGAGGCTACAATATATAGATTAGAATCAAACCATGTTACAAACAGGAAGgttgaagataaaaaaaaaaagcaaaatttccCATATCAGAGCTCTGTTCATAGCGAGAGTGTTCTTCTGCCCTTCATGCATCATACGAGACATGTCCCCGCCTCCTCCGCAGTCCACCCTCCCCCATATTCCAGAATCTTCTCCGGGACAAACTGTGCCGTGCTTATACAGATCTATTTTAATACACTCGACACTACGTTGAACAAGATGaaacttttttatattcttttatcAATGAAcgtgagaaagaaaagagacaaaaagaacatgacaattttttattgtttgccAATTATGCATTTAGCTTGCAATGTGTGATGTGTCCGTATGCTATGAGGAAAAGgtagcaaaaataaaactgaaatggaaAAGGCAACAAGGCTACTGTTAGATGGATGTCTTCGGACTGTCAGAgtagtgttttttctttgtcattatGGAAGGGGACTGTCCAGTGGATAGTATGTATAGGAAAGTGTTTGTCTTACATATGCCAATgtagttttttcttctttatgaTGCATTCAAAGTTGATTGATGGAAGTTGGTAAATGGTAAAGAGTAGTCACACTTTTTTGTACCAAGTTCTTATTGAAAACTGAATCAATAATAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336181 lncRNA downstream 108762 16838535 ~ 16849762 (-) False LOC113532230
XR_004579992.1 lncRNA downstream 338806 16618712 ~ 16619718 (-) True LOC117599589
TU335948 lncRNA downstream 508758 16448439 ~ 16449766 (-) True G283546
TU335946 lncRNA downstream 508758 16449017 ~ 16449766 (-) False G283546
TU335947 lncRNA downstream 509749 16448439 ~ 16448775 (-) False G283546
TU336452 lncRNA upstream 76740 17041627 ~ 17043280 (-) True G284003
TU336615 lncRNA upstream 541989 17506876 ~ 17507145 (-) True G284131
TU336618 lncRNA upstream 548723 17513610 ~ 17515240 (-) True G284134
TU336619 lncRNA upstream 556539 17521426 ~ 17523643 (-) True G284135
TU336633 lncRNA upstream 583445 17548332 ~ 17553258 (-) True G284146
XM_026923499.2 mRNA downstream 105129 16839401 ~ 16853395 (-) True LOC113532230
XM_034313042.1 mRNA downstream 141104 16815760 ~ 16817420 (-) True kcna1b
XM_026923299.2 mRNA downstream 186829 16769270 ~ 16771695 (-) True LOC113532119
XM_034313133.1 mRNA downstream 259068 16688373 ~ 16699456 (-) True LOC113531734
XM_026922603.2 mRNA downstream 259671 16688373 ~ 16698853 (-) False LOC113531734
XM_026923216.2 mRNA upstream 97881 17062768 ~ 17099329 (-) True kiaa0930
XM_026923621.2 mRNA upstream 154459 17119346 ~ 17193239 (-) True LOC113532299
XM_026922628.2 mRNA upstream 296803 17261690 ~ 17316582 (-) True LOC113531742
XM_026923436.2 mRNA upstream 469555 17434442 ~ 17439078 (-) True sapcd1
XM_026923395.2 mRNA upstream 498068 17462955 ~ 17480834 (-) True slc37a3
TU335292 other downstream 1780911 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 4377461 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 5298197 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 5370500 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 5699132 11238935 ~ 11259392 (-) True vegfab
trnar-ccg_5 other upstream 138678 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 1013898 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 1013898 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 1105860 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 1118351 18083238 ~ 18083309 (-) True trnaa-ugc_10

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00057484 True 5104 lncRNA 0.35 2 NC_007115.7 74820066 ~ 74825406 (-)
grasscarp (Ctenopharyngodon idella) TU393285 True 1169 lncRNA 0.32 1 CI01000133 1460200 ~ 1461368 (+)
rainbow trout (Oncorhynchus mykiss) TU1951903 False 2590 TUCP 0.42 2 NC_048585.1 7588536 ~ 7601354 (-)
eurasian perch (Perca fluviatilis) TU305398 True 1292 lncRNA 0.40 3 NC_053134.1 2292866 ~ 2297002 (-)