RNA id: TU337037


Basic Information

Item Value
RNA id TU337037
length 825
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC113532261
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17978763 ~ 17988280 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCCGCCTCTCAGCTCAAAACTCATGGAGCGCGCGTGTCTCCAGGACAACTCGACATAAACAAAGCATTTCCGCTGGGAATAAGAGCCCATGGTGTTATTCTCCTCTCAGAGTGTCTTCAGTACTCACCTGAGAAAAGCAGACACTTGAGAATGcctACAGGAACCAAGAAGTCCAAGTCCCATAGTGCCAAACCTAGGAAAAAGAGTGACAAAAAGCGACTATCTAAGAAAAGGTCAGCGAGCACTACATGCACAAAGCCAGCAGTGGATATTCTGAGCCCAGCTGCCATGGAGAACGCCTActacatttcccacaatgcagtAGACTGCCTGGAGTTCAGAGGTTTTGGCTGGCCTGAAGCCActaagaaaaaaggaaagggactcaagaaaaaaacaaaaaaacaaaaatgaggaAGAGAGAACCAGTCTTACTGCGAATTACAAAAATATCAGCCGTAGATATTCTGTTTATGATGCTGTCAGGTACATCAATTCTGAATCaatgctgtatatatttttaatgaagccAAGCTATCTTTCGTGGATGCATgtgtaatgctaatgctaagttGTATATTTCTGAGATAAACAACAACAGATAAAATTCATTCACTGGCCTCTTTAGACTGTTGATATTAATTAATGACCAGCTGCTGTTTTTGACAGTgtacacagtgctgttgaatccttgattctgattagtcagaaggtgctgataaATCTTTTTGTAACAGCCGCACTtacaatagttctggctgcaaaggttatattaatgtgctcattacTGTAACAACTTATGCAGGAATGGTGAAcatgccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336874 lncRNA downstream 77518 17901025 ~ 17901267 (-) True G284352
TU336869 lncRNA downstream 80555 17895335 ~ 17898230 (-) True G284349
TU336843 lncRNA downstream 127891 17850457 ~ 17850894 (-) True G284323
TU336815 lncRNA downstream 188022 17790534 ~ 17790763 (-) True G284295
TU336814 lncRNA downstream 213856 17762031 ~ 17764929 (-) True G284294
TU337033 lncRNA upstream 47488 18027734 ~ 18029915 (-) False ahcyl2b
TU337055 lncRNA upstream 108408 18088654 ~ 18088942 (-) True G284520
TU337057 lncRNA upstream 111971 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337106 lncRNA upstream 200133 18180379 ~ 18184992 (-) True G284559
TU337140 lncRNA upstream 366207 18346453 ~ 18346836 (-) True G284590
XM_034313218.1 mRNA downstream 7541 17907628 ~ 17971244 (-) False ano2b
XM_034313216.1 mRNA downstream 7541 17907628 ~ 17971244 (-) True ano2b
XM_034313217.1 mRNA downstream 7558 17907628 ~ 17971227 (-) False ano2b
XM_026923553.2 mRNA downstream 24128 17907628 ~ 17954657 (-) False ano2b
XM_026923554.2 mRNA downstream 29407 17907628 ~ 17949378 (-) False ano2b
XM_026923724.2 mRNA upstream 10383 17990629 ~ 18023472 (-) False strip2
XM_026923721.2 mRNA upstream 10383 17990629 ~ 18023472 (-) True strip2
XM_026923723.2 mRNA upstream 10383 17990629 ~ 18021740 (-) False strip2
XM_026923722.2 mRNA upstream 10383 17990629 ~ 18016794 (-) False strip2
XM_026922878.2 mRNA upstream 48041 18028287 ~ 18067585 (-) False ahcyl2b
trnar-ccg_5 other downstream 875148 17103565 ~ 17103637 (-) True trnar-ccg_5
TU336422 other downstream 1013898 16958524 ~ 16964887 (-) True phf21b
TU335292 other downstream 2801172 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 5397722 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 6318458 11657890 ~ 11660327 (-) True G281092
XR_004580005.1 other upstream 90501 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 102992 18083238 ~ 18083309 (-) True trnaa-ugc_10
trnaa-ugc_11 other upstream 103537 18083783 ~ 18083854 (-) True trnaa-ugc_11
trnaa-ugc_13 other upstream 110305 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_14 other upstream 112227 18092473 ~ 18092544 (-) False trnaa-ugc_14

Expression Profile