RNA id: XM_026922749.2


Basic Information

Item Value
RNA id XM_026922749.2
length 2386
RNA type mRNA
GC content 0.43
exon number 18
gene id il17rel
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16568695 ~ 16581436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCctcagacagaaacagagatcAGCTTAACCTGCCCTGTCCATCATTTGGGTTCTCTTCCTCTAGCACCTTCAGCCTATTCACCCCTCAACCAGCTCCAAGCTTCTCATTGAAGATGAAGAGTGTgttgctgctactgctgctgttaTTGCTGGCTTTCTGCACTTCCAGACTGCAGGGAGAACGGGTAGAGAAGTGTGAATACCCTTGCTCACAGGGACTCCATTGCAAGACGAAGCCTCATTTCTCATTTGAGCAATGCAAGAAACGGCCAGACGGCATGACCAGAGATGTGTTTAGGAACACAAGCATCTCCACAGTGATGAGGTGTAAAGGGGTTCGACAGTGTTCTCTTTACCTCCGGATCAGGACTCATCTACAGCTAAAGAAACACATCCATGGCATCTACATATGCACAGTCAGTGCAGCGATGATGGAACACTGTGGGATTGTGATCttctcacgcacacacaaagaaaaagtgGTGGACCATCAGGTGCATATTCAGGATGATTGTCTGGAAGTAGGCATAGGACAAGATGTTTATGTAACCCTCCAAACTTGGCCTCAATTCTGCGATGTGGCTTATTCCAGAGCATATCGTGTTCCAGACTGCAGCAACAAGGACCTACAAGGAAACATTCCAGAATGCACTACCGGCAGGATTGACTATGAGGTGGACTTGGAGAGGAAGGAAGTGCATATAAGTGTGTCAGACATGCTGGAGGACAAGGACTACCATGTTAGACTCTGCCACAAGGATTACATCTGCGCTGGCACTGGAGCTCACGTATTGATAAAAAAGGAGAATCCAGTGAAAAATGTAACTCTGAAGTACTCCAAACCAGTGCCCTGCTTGTGCATTGAGGGCTGGTCTGCCATGACTGATGCTTCTCGGCTTCAAGTCTGCCCTTTCAAAAACCGCGTTGAGGAACTCTGGTCTGGGATAACCTTTGACCCTGAGGAGGAGACTCTGTCATGGGAAGCTTCATGCCAAGTTAATGCTGTCATCTCGCTGTGTGAGCTGCAAGACCAAGGCGTGTGCCAAGACCTTGCCAATTCTTCTCAGAGATATGTCAAAAGAATGGTGACATATTCAGCAGTGGATCCTCACCCTCGGCTTTGCATGAAGTTCGTCACAGAGACCGGGGCATGGATAAAGTGCCCATTTTCAGATGGGAATTTCCCAGCCTGGCAACTAGAAATTTCTACTGAAGAGGACCAGCCACAGCTGCTAGTGACTTCCCGGGTCAAAACAAGCTTgtctttgagtgtgtgttccaAGACTGGGGACTCTGGGTGTGAGGACACACAAACCATCTTAGTTGATGTGGAGAAATTTAAACATGTCCAGCCAAATCTGGCTATGGATCTTTGCACATCAGGTCTCTGCATCAAGGCAAAGCGTATGGATGTAAAATATGGAGTAACCACTCTCTTTTGCCAACCCTCATGCCCATGTTCTTCCTCCAAGCCCTCAGACAGTAACAGTAAATGGCAGCTCATGTATTTCATTGTGCCAGCAATGACACTAACTACAGCTGTAGCCGTGGCTGCTGCTGTGATGACCATTGCGATGATTGGTTACTGCGtcaaaaggaaaataaagggTCGGGGCATTGCCCACTTACCAGGACCAcacacagCCTTATTCTCTCCAATGACTGAGGAGGTGAACTCAAAAACTCAGCTGATGTCCACAACAGTACTTGATGATGGAAATAGCTCAGAAAGCTCTCAGTTACGAGACTCTGAGAGGTCCAATCTACTGAATGACTTCACAAACCACTTAGAAGTGTAGCTCTGAAGATGGCTTAAGATGGAATgtgccattttcattttactttgcATTTCATGTTTCTGTATTGGGgtcaaaatgggaaaaaagtggaaaggTTATATTCTTAAAACATACCACAGAGattattttgtatgtttattgttattgatCATGTATTTTGATGTGGACTGTTATTCAGAATGAccattttgcactttatttctctcttggTGTGTAATTTAATGAGAGTGGAATTACACCATGATATTGTAGAacacttatacagtatatattaataatctactgtaaaataaacagacttcagagcaaaaaaaaaaaaaaaagacaccatcCAGCTTTAAAAGTCTTCAAACCTTCAAAACTTTTAAAAGACTGCTGTGTATATTTCTGCTTTTGTGTTACAGAGcagaatacatttatttatgtgatATGTGTGGTTTATATTCTTGTGAGATAGActtatttttttacttgtttctATTCTTGAATGTCATTGTTATCTTGAAATGGTTTGCTATAGGTCATGTTTAAAGCTCTCAACACTGCCATTTTGCATGTGGAAGTTCTCAATAAATTGCTTCACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335948 lncRNA downstream 118929 16448439 ~ 16449766 (-) True G283546
TU335946 lncRNA downstream 118929 16449017 ~ 16449766 (-) False G283546
TU335947 lncRNA downstream 119920 16448439 ~ 16448775 (-) False G283546
TU335937 lncRNA downstream 166747 16400921 ~ 16401948 (-) False alg12
XR_003403336.2 lncRNA downstream 272505 16294880 ~ 16296190 (-) True LOC113532372
XR_004579992.1 lncRNA upstream 37276 16618712 ~ 16619718 (-) True LOC117599589
TU336181 lncRNA upstream 257099 16838535 ~ 16849762 (-) False LOC113532230
TU336452 lncRNA upstream 460191 17041627 ~ 17043280 (-) True G284003
TU336615 lncRNA upstream 925440 17506876 ~ 17507145 (-) True G284131
TU336618 lncRNA upstream 932174 17513610 ~ 17515240 (-) True G284134
XM_026922599.2 mRNA downstream 115756 16449786 ~ 16452939 (-) True LOC113531729
XM_034313344.1 mRNA downstream 161832 16401207 ~ 16406863 (-) True alg12
XM_034313343.1 mRNA downstream 179214 16369669 ~ 16389481 (-) True brd1a
XM_034313186.1 mRNA downstream 789751 15756306 ~ 15778944 (-) False cerk
XM_026923051.2 mRNA downstream 789753 15756306 ~ 15778942 (-) True cerk
XM_026922863.2 mRNA upstream 40667 16622103 ~ 16647682 (-) False LOC113531895
XM_026922862.2 mRNA upstream 40667 16622103 ~ 16647682 (-) False LOC113531895
XM_026922861.2 mRNA upstream 40667 16622103 ~ 16647682 (-) True LOC113531895
XM_026922864.2 mRNA upstream 40667 16622103 ~ 16645227 (-) False LOC113531895
XM_026922866.2 mRNA upstream 40667 16622103 ~ 16634931 (-) False LOC113531895
TU335292 other downstream 1391082 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 3987632 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 4908368 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 4980671 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 5309303 11238935 ~ 11259392 (-) True vegfab
TU336422 other upstream 377088 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 522129 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 1397349 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 1397349 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 1489311 18070747 ~ 18082361 (-) False tmem209

Expression Profile