RNA id: XM_026923436.2


Basic Information

Item Value
RNA id XM_026923436.2
length 1737
RNA type mRNA
GC content 0.40
exon number 4
gene id sapcd1
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17434442 ~ 17439078 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCCCAGCGAAACATTGCCTACTGAGTCGATTGTCCTGTTACAGGgtttcttttgctctctctggTCTATTCTGCTTGTCACTGTGCTGTCTCTTGTGTGTGTAACGTGAGTGGAGTGTGGACGTGGCGTCCCTGTGTATATGGCCATATGGCATGTGATGGCTCCTACACAGTGGTTATCGTTCCTCTGCAGAACAGCCTGTACAGCTCGGACGCGCTGCGATTCTTCCACTGGCTGAAGAAACTGCGTgctctggagagagagaaggacagtcTGTGGATTGGACTGCAGGTCCTCGAACAGGCTCGGTTCTGGTATCAACACCAGCTTGAGCAAGTCTCCCAGAGGCATGCAAAGATCGGCACAAGAAAACACGAGGAGGAAGAAgagggcTGGTCGTGTGCGTTACGCTCCTCTATGCTGCGTGTGAACGGAAGTCTGGGCAGTTTGCTGAACAatgcatatgtgtgtaatgCATCCCCTGATGGGAAGGACGGCTTAGACTGGTATCTGCGCTGGACCAACGCCACACTCACCCAGGAGGTGAGTCAAAAGAATGACAGGATTTCTATGTTGGAGATTGAGAAAGAGATACTCACTCAACAACAGGATGGAATACATTACTTCtgaggccacacccacacacacacacacacacacacacacacacacacacacacactaacacacaaaatACTCCATCTCCATCTTTGTAGAATGATCTTGAATGTGCTTTTGAATATACTTTTAAACACACAACCAGAATCTGTGGCCTTACTGTAACAGTTGTAAATATGTTTGGAAAATTGCACATAAGAGTACATTTGTCATTTAATATAAtcctgtttattgttttttgctttatatAGTTAGATGGTGTCCCTTGACTACAAATGTGAATTGTGAATGTTTATGGTTGTTCATACTTTATTAAATCAactatttgttttgttgtggcCAATGGCAAAGTGTCCACCTCTAATTTGTTTCTTCATCTGTCATGTTCTATCCTGGGAAAAATaacccctctttttttttttttacttaaactgGAATCTTgctaaaaattatattttcaacATGAAACTTTATGTGCTTGGCATATTTGaacatgaaaaatgacaaaCCCCACTTCATATTACTATTGCACAGGCTATATTTGGGTCATTGCGATCTGagattaaaatggattaaatataaatgaggCTCAATTgaggccaattttttttttaaagaaaaaaaatcacaaattaactaactaactaaataactaactaaataactaacaaACATACCCTGCTGGTAAGAGCATCTTCAGGCACGAGAAGTGGTTTTATTATCTTTACTGTTCCCTAAAAACTTAGGTATATTAAAGGTTGgtcatttcaaatattattttctgtctCAGCTGCCCAAAGTCAGTATGATCCTTGAACAGTACATCCATGGCTAAAAAGTGAACACAACACAAGGGTTATATAAAACACCAAAGCTTCTGGACTGCAACTCTTCAGCTTCACACTAGAGTGCAGCAGAGTACATGAAGGCAAAGCAGTAACACAGCATTGTCAACACCTACATACAAGGGTAtgtaattatacagtatactataaaGCCTATATTTTTCCAGCTCTTTTTCTGTAGCAACTACATCCAGGTTTGCCGcaatatcacacacatgaaaaaaatttgactattatttatttgtcatcaCTTCCAGTTACTGGTCTGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336452 lncRNA downstream 391162 17041627 ~ 17043280 (-) True G284003
TU336181 lncRNA downstream 584680 16838535 ~ 16849762 (-) False LOC113532230
XR_004579992.1 lncRNA downstream 814724 16618712 ~ 16619718 (-) True LOC117599589
TU335948 lncRNA downstream 984676 16448439 ~ 16449766 (-) True G283546
TU336615 lncRNA upstream 67798 17506876 ~ 17507145 (-) True G284131
TU336618 lncRNA upstream 74532 17513610 ~ 17515240 (-) True G284134
TU336619 lncRNA upstream 82348 17521426 ~ 17523643 (-) True G284135
TU336633 lncRNA upstream 109254 17548332 ~ 17553258 (-) True G284146
TU336631 lncRNA upstream 119329 17558407 ~ 17564955 (-) True G284145
XM_026922628.2 mRNA downstream 117860 17261690 ~ 17316582 (-) True LOC113531742
XM_026923621.2 mRNA downstream 241203 17119346 ~ 17193239 (-) True LOC113532299
XM_026923216.2 mRNA downstream 335113 17062768 ~ 17099329 (-) True kiaa0930
XM_026922958.2 mRNA downstream 406577 16958512 ~ 17027865 (-) False phf21b
XM_026923395.2 mRNA upstream 23877 17462955 ~ 17480834 (-) True slc37a3
XM_034313145.1 mRNA upstream 45480 17484558 ~ 17485421 (-) True LOC117599538
XM_034312988.1 mRNA upstream 47733 17486811 ~ 17494787 (-) True LOC117599443
XM_034313293.1 mRNA upstream 59310 17498388 ~ 17506497 (-) True LOC113531974
XM_034313292.1 mRNA upstream 59310 17498388 ~ 17505454 (-) False LOC113531974
trnar-ccg_5 other downstream 330805 17103565 ~ 17103637 (-) True trnar-ccg_5
TU336422 other downstream 469555 16958524 ~ 16964887 (-) True phf21b
TU335292 other downstream 2256829 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 4853379 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 5774115 11657890 ~ 11660327 (-) True G281092
TU337036 other upstream 539707 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 539707 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 631669 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 644160 18083238 ~ 18083309 (-) True trnaa-ugc_10
trnaa-ugc_11 other upstream 644705 18083783 ~ 18083854 (-) True trnaa-ugc_11

Expression Profile