RNA id: XM_026923559.2


Basic Information

Item Value
RNA id XM_026923559.2
length 2393
RNA type mRNA
GC content 0.51
exon number 8
gene id foxm1
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11487504 ~ 11492269 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCTCCTCTGATTGGTTCGCTACAGCACCCTGACCTGCGCTTATTGGTCAGATCATGATCACGTGACCTATATTGATAGGTCTGCGCCAAAATTCAAACTGTCTTGGTGAAGAAGACGGAAGTGGCGACTTTCATCCTCTCAGTCAATGAAGTTACGGTTTTACAACGGCGAGATAAAAAAAAGGACGTATGATAAATTGAGAACTGACATAATATGAAGGGATCCGGTCGGCTATGAACAGGATGAGGGAGAGTCCCAGGAGGCCGATAATCCTCAAGAGGAGGAAACTGCCATTTCAGAGAAATGAAGCTGAAGGGCCACAGAGCAAATCTGCTACGGCACCAGGAGCGCAGTCCTTTCCAGATGGCATCTGCATCATGGACCATCCCACAATGCCGGACACGCAAGTGGTCGTCATACCAAAAACCGCAGATCTTCAGAGTGTCATTGATGTGCTGACTGCCAAGGGGAAGGAACACGGCGCACAGGGGCCAAACAAGTTTATCTTGCTGAGCGGAAGCAATGGAGCGGAGGATGGAGTCGAAGCCCTCAGCCATGCCACATCAGAGTGTAAAAACAACCTCGGATCTGAAGCATGTGTAGCCGGAGACGCCAAACCTCTCCCAACCAGCAGATTGAAAAATGAACCAGACTGCAGTCCGTTAGATGACAGCCTGACAAACATCCAGTGGTTGGGGAGAATGAACACACATGTCGCTGGTGCTGAGCCAGCAAAGAAAGATTCCAATAAAGAGAATTTAGATGGCTGTGTACAGCTTCCAGAGCCACAGCATGCAGAGGACGAAGTGAGTGCAGTGAAGGGCCCTTTGTCAGAAAGACCACCTTACTCCTATATGGCCATGATCCAGTTTGCGATCAACAGCAAGAAAAATAAGAAGATGACTCTGAAGGAAATCTATAACTGGATAGAGGACCATTTCCCCTACTTCCGAAATGTAGCTAAACCAGGTTGGAAGAACTCCATTCGCCATAACCTCTCCTTGCATGATATGTTCGTCCGAGAGAGCACACCAGATGGCAAGATCTCTTACTGGACCATTAAGCCTGAGGCAAACCGCTGTCTCACATTAGACCAGGTGTATAAGCAACAGAAGCGAGTTATGCCTGATCCTAAGAAAGCTACACCTTGCACCGCAGAGAGGAAAATGAAGCCTCTCCTGCCTCGTACGGACTCGTACCTAGTGCCCATTCAGCTTCCTCTGACTCCTTCGCTCTTCTTGCCCTCCCCGGCTGCGCTCCCTCTGTCTACCCCTCAGCAGAGTTCCAGTGCCTCCAATCCCATCTCCAAAGTGGGGTGCAAGAGGCTTTGCATCGCTCCCAAGgttctGAAGAGTGAATCCAGCTCTACCGTGACGTCTACCCCAGTCCCTGAAGTGAAGGAAGAGCGCGTGTGCGTACCCGTCAGTGCCGAATCCTGCAGCAGCAAACGGAAGGAGATGAGCAGCTCGCGTCGTAAGCAGCGTCTAGTCCCGCCTTCCACCGAGGAGCCTGTCCTGCTCTTCCCAGACAGCACGTTCTTCGACTCTGGAGTGGCCTCGGACATCTCCGTCTTCCAGGAAGTGGAGCTAGAGGCAGAGCCCCGGCGTGACCCCCAGCTGGAAAGTGAAACCTTTAAAACGCCCATCAAAGGGAGCCACCCGGCTTCCTCCACACCCAGCAAGGCCCTGGAGCCATGGAGGATCACGCCGCTGGGCAAAGGGAGCCGCAGCGTGCTGGATTTCAGCCCGATCCGCACACCGCAGCGGAACGAGCACAGTGGTTTGAGCTTCAGCAGCACGCCCTTCAAAGAGCTGCCGCTATTCAGTTCACCCCGTGAGCTGCTCACTTCCTGTTCTCGAGAGCAGCAGACGGGAACCGCTAACCGCTCGCTCACCGAGGGCCTCGTGCTGGACACCATGAACGACAGCCTAAGTAAAATCCTGGTGGACATCAGCTTCTCGGGGCTGGAGGATGACGACCTGGGCATGGCCAACCTCAGCTGGTCGCAGTTTATTCCTGAGCTGAAATAAGCCACATCGCATCCTTTTTTCTATTCAAGCTGCTCACACGCTTTTTCACTGCCTCAGTgtctctgggttttttttccccttgctaATATATGCAGACATTTTACCCTACTTTTAATATCTGACCCTCAGCTACACTGCTTTTTGTGCAACAGCCTGTCAACCTATTTTCAGACGTCAGGTTTGtcaggttttttatttttttggttactCTCTTTAACCTGTTAGGATTAAAGAGCATTGCTTGAGTAAGATTGTCATGGCTGTCCACCCTGAAGCACAACGACTTGGACGTAAGCACCATCAGCCAGTCATAGTTCATTtccaagctaaaaaaaaaaaacctggacaCATTCCTACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333037 lncRNA downstream 127868 11359362 ~ 11359636 (-) True G281021
TU332834 lncRNA downstream 227513 11259791 ~ 11259991 (-) True G280841
TU332800 lncRNA downstream 303361 11183066 ~ 11184143 (-) True G280818
TU332799 lncRNA downstream 305453 11179931 ~ 11182051 (-) True G280817
TU332792 lncRNA downstream 315058 11169886 ~ 11172446 (-) True G280812
TU333091 lncRNA upstream 69456 11561725 ~ 11562064 (-) True G281057
TU333104 lncRNA upstream 91124 11583393 ~ 11583637 (-) True G281070
TU333109 lncRNA upstream 96734 11589003 ~ 11589687 (-) True G281075
TU333143 lncRNA upstream 215421 11707690 ~ 11710984 (-) True G281102
TU333155 lncRNA upstream 247461 11739730 ~ 11752892 (-) False dusp16
XM_034313375.1 mRNA downstream 17868 11462894 ~ 11469636 (-) False pgm3
XM_026922681.2 mRNA downstream 17873 11461887 ~ 11469631 (-) True pgm3
XM_034313374.1 mRNA downstream 18180 11461887 ~ 11469324 (-) False pgm3
XM_026923832.2 mRNA downstream 33054 11444110 ~ 11454450 (-) True ccnc
XM_026923788.2 mRNA downstream 45897 11426058 ~ 11441607 (-) True faxca
XM_026923415.2 mRNA upstream 97544 11589813 ~ 11596577 (-) True ada2b
XM_026923285.2 mRNA upstream 104499 11596768 ~ 11601405 (-) True atp6v1e1b
XM_026923353.2 mRNA upstream 117864 11610133 ~ 11639731 (-) False snap91b
XM_026923355.2 mRNA upstream 117864 11610133 ~ 11639731 (-) False snap91b
XM_034313280.1 mRNA upstream 117864 11610133 ~ 11639731 (-) False snap91b
TU332827 other downstream 228112 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 480361 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1191383 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1864885 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 2278941 9207351 ~ 9208563 (-) True G279415
TU333108 other upstream 94035 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 165621 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1088654 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3682079 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5466255 16958524 ~ 16964887 (-) True phf21b

Expression Profile