RNA id: XM_034313343.1


Basic Information

Item Value
RNA id XM_034313343.1
length 5025
RNA type mRNA
GC content 0.50
exon number 14
gene id brd1a
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16369669 ~ 16389481 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCAGAAAAGCAGAAGCACAGCAAATTTTTGAGGGTCGACGATGGGGAAGAAGGCACGGAACAACAGGATCCCCGCACTGCAGCGGGCACCCTCTCCCATCAAGCCGTCACCAAACAGGGAGACCCTGACGTACGCACAAGCCCAACGCATGGTGGAGCTGGAGGTCGATGGCCGCGTGCACCGGATCAGCATCTTCGACAAGCTTGATGTCATCACTGATGACGACCCTGTGGCTCAGGAGATCATGGAATGCACCAGCAATAAAGAGAACACAGAAAAACCTCAGCAGGCCCCGTTGCGGTCGGCACGTCTCAAAAACAACCGTCTGAAAAAGAACGccgctgtaaacacacaagggGCTCAGGCGTCATCCTGCACCCTGCCCGAACCGAAATTCCGCACTGTGGAGTATAACCTTCCAGCCGTGCCGCGAAGACCTCAGGGGTATTATAGGTACGAAGAGAAAACCCCGGAGGAGCTAGACGAGGAAGTCGAATATGACATGGACGAGGAAGACTATGCCTGGCTGGAGCTGGTCAATGAAAAGAGACGAAGCGAGGGCTTCAGCCAGGTCTCTCCCAACGTCTTTGAGTTCCTTGTGGACCGCTTTGAGAAGGAGTCATTCTTAGAGAGCCAGGGCCAGCAGGATCCACAGTCTCTGGTGGACGAGGATGCAGTGTGCTGTATCTGTATGGACGGCGAATGTCAGGACAGCAACGCCATCCTTTTCTGCGACATGTGTAATCTCGCAGTGCATCAGGAGTGTTACGGAGTTCCGTACATTCCCGAGGGCCAGTGGCTGTGCCGCCACTGCCTGCAGTCTCCCACTCAGCCCGCCGAATGCATCCTCTGTCCCAACAAAGGTGGCGCTGTTAAGAAGACTGAGGATGATCGCTGGGGGCATGTGGTCTGTGCGCTGTGGGTGCCGGAGGTTGGCTTCTCTAACACGGTCTTCATCGAGCCCATCGACGGCATAGCTAACATTCCACCCGCCCGCTGGAAACTCACCTGCTACCTCTGTAAGGAGAAAGGCGTCGGCGCCTGCATCCAGTGCCACAAGGCCAACTGCTACACCGCCTTCCACGTCAGCTGCGCACAGAAAGCTGGCCTTTTCCTGAAGATGGAGCCCATTAAAGAGACTAACGATTCGGGCGAGCCCACCTTCACTGTGAAGAAGACGGCCTACTGCGGAGCTCACACCCCCAACGGGTGCGTCAAAAGGCCCCTCGCTATATACGACGAccccaaaaacaaaaccaaaaacggAATCTGTCGGACGTCTAAGAAGAAAATGAGTCTTacaaaaaagcagaagaacaaaaagaataaaaagagcGTAGAGTCTGTAGCAGCAGTCCCAGCTATGACTGTCTGCAGTTTTCCACCTCATAGGTTGGACTCAATCCTCAGTCAAGTTTCTCTCCAGAGAAAGAAGGCATTTGTCGAGCTGGTCTTGAACTACTGGACCCTGAAGAGACAATCACGGAACGGGCTGCCACTGATCAGACGACTGCACTCCAGCCTGCAGTCCCAGAAAACTGCCCAGCCTAAGCACAGCGAGGAAGAGAGCCGGGCGCTGAAGGAACAGCTGAAGGAGTGGCACCGTTTGAGGCATGACCTCGAGAGAGCCAGGCTATTGCTGGAGCTTATCAGGAAGCGAGAGAAGCTCAAGAGAGAGGAGGTGAAACTGCAGCAGTCAATTTTAGAAGTGCAGCTCTCCCCGTTAAGCATTTTGCTAAGGGCTGTGTTGGACCAGCTGCAGGAAAAAGACCAGGCCAGGATCTTTGCACAGCCAGTTAGCATCGAGGAGGTACCTGATTACCTCGACCACATCACGCACCCCATGGACTTCTCCACCATGAGGAAACGTATAGATGCACAGGCTTACAGTAATCTGGATGACTTTGAGGCGGATTTCGATCTCATCATTGCAAACTGCATGAAATACAATGCCAAGGACACATATTTTTACCGTGCGGCTGCCAGACTGAGGGATCAGGGAGGAGTTCTGCTCAGGAAGGCACGTCGCCACGTCGAACGCATCGGCTTCGAGCCAGGCACAGGCATGCACACATGTGAACCACCCAAGGTCGAGGCACCTCCTCCTTTCTCGTGGGAAGATGtgGACCGGCTGCTGATCCCAGCCAACAGGCAGCACATGTCACTTGAGGAGCAGTAAGAGCTTCTGGAGAAGCTGGATCTGACCACGGCCATGAAGACGAGCCCTTCACGCAGTAAACGACTGAAGCTGCTGAAGAAGGCCATCAGTGACGTGAGGATGGAAATGAGTCTGAGGAGCACGTTGTCTCACTCCTCTGAACACGGAAGACCAGCAGAGGAGCCAGCAGCAGAGCACAGTCCAGCTGAGGAAGgAGACAAATCGGCCCCTCCAAAGCTGGAGCCGTCAGATTCTCATCCCCCTGTCGTCCGATCAGACGGCCCGTCGGAGCCGCCCACGCTGAACCCTGTCGAGCTTACCTCAGAACAACAGCGGCTGGGAAAGCCCGAGCACACGGAGACGCTGAATGGACTCTCCCGGGATCGGTTACTGATGGACAATGCTGATGTCAGTGTGGTGGCTACGTCCACCGTTGCTGAGCGCTCGGCTCCTGTAAACAGGCGCACGTCGGTGCTTTTCCGTAAGTCCAAAAGCACAAGCCCCCAGAAGGCCACAGGAGGGGATGAAGCCCAAATAGGTGCCAAGACCATCCTGTCAGTAGTGATCCCACGGCTAGAGACCCTGCTTCACACCAGGAAGAGGACGCGTAGTGCTAGCCGGTGCAGCGAGGGCGAAGAGGAGATGTCTACTAAGCGCCCTGGTCTATCGAATGGTTTTGTTCTGGAGGAGAAGAAGGCATCGAATCCCGGCAGGCAGCAGGAGCCTCGTCGCAGATGTGCCTCAGAATCCAGCATTTCCTCCAGTAGCAGTCTGCTGGGCAACgccagCGCCCCTCTGGGTTTCCCGAAGTGTGGAAAGGGGAAGCCAGCCCTCGTGCGCAGGAACACTGTGGACGACAAAAGCGAGCTCATCGCTTGCATTGAGACTGGGAACTTTGCCAAAGCTGCTAGACTCGCTGCTGAAGTTGGGAACAGCAGTTTGTGGATGCCTGCTAATGCTGCAACAGTTGTTCTGGAACCTCTAAAGCTAGTTTGGGCAAAATGTAGTGGATATCCGTCCTACCCTGCCttgATAATCGACCCTCACATGCCTCGGGTGGGCTGCAATCACAACGGGGTGTCCATACCAATCCCACCACTGGACGTGCTCCGCATTGGAGAGCAAATGCAGTACAAGTCCGAAGAGAAGCTCTACCTCGTCCTTTTCTTCGACAACAAACGCAGCTGGCAATGGCTTCCTAAATCCAAAATGGTTCCTCTCGGAATCGACAAAACCATCGACAAGATCAAAATGATGGAGGGCCGCACCTCAGCCATCCGCAAAGCCGTTCAGATCGCCTTCACGCGGGCCATGAGCCACCAGAGCCGAGTGCAGGACGAGCCGAGCAGCGATCTCAGCGACGTTGACTAACAGCAGAGACCGCAGAGCACATGGGTGGACTGTAAAGCCTTAGTATGCTCCATGCCTTGCTCAGATCTTCAATTGTCTGCTGCCAAagctctttttcttcctcttcacGAGGAGAAAGTTGCTCTGGCGACTGCTGCTTTGATGACTGTGTGCGTGAATGCATTTGATTGTCTTCTCCTTCACTGTGCCGGGGCGCTTGCTGCCACCTTCACTGCCACTCACCTCCTTCATTTCCACCTAAAGTTCTCATTTCCACTCAAAAGTATTCATTTGTTCTACGAACtctgtaaataactgtaaatggCTTCATCCTAACTTATTCTGTAGAGTTGCCGCACTGGGTACTGTacatttagtttctttttttttgtagtatttatataatattttttttgtcgGTGAATTACCTTTAGCATCTCAGCGTCTTCCTCACTGATGCAGAAAAAGAAGTTCAAGCAGGAAAGGACGCTTGATCagggcttaaaaaaaaataatgtgagaatattgtttttttttttttatcatttaaattattGAAGTTTATATGCATAAACTTCTTTTTGGTATTATGTCTTTTGTACCcaataatgttttataacagTTTTAGCCTATTTTGttgtgatatatttatataagtaaatatatatcTGTATTCTTTAGATGCTCACACAAATTACTGTTGTTATGGAAACTGAATGCGTGTTGTTCTCAtgaaaccaaaagaaaaaaaatgctgcccagacatttcctttttttaaaaatattttttaagttttgtttgtgttgtttgaaCAGCCTTGTCtacactgtaatgtttttttttttggtttgtttgtttttgttttttttgtgttatgtaTTGGTTGTGTATTTGGGACCTTCATGATATTGTAGTTGAATGATGTGGccatgttaaattatttttttggggggtgggaTGGGGGAATGAACTAATTGAGAGATGAATCCGTTTCAGTTGGCACATTCCATTGGCTCTCTAATGATAGCCTTTATATAAATACTGTTAGATATGACTGTTTAGTGAAATAATTCACTGCGGTCATTTAGTTGTTCTCTGGGTAGCAAAAGGGTAGATATAAGGGTGGatactttttatacattatagatttttttattggaTAACAGAATggttgctgggttttttttatagataataaaaaaaagatgactaaACTGACTAAACATATGAACTTAGAGTcttcatttgttattttattgagCATGGGGACAGGGCATCATGGCGGGGGGTagcgggtagtgttgctgcctcacagcttcagggtgcccggttcgatcctgagcttgggtgcgagatgtctgtgtggatttcttCAGTATCTCAGGTTTTCTCCCATCTCCCATAAAGATGTCAGATTTTGTGAATTtcccccaggtgtgaatgggtgtgtgattgtgtgccCTGAAATGGACAGGCATTTCATCccggtgtattcctgcctcatgcccagaaTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403336.2 lncRNA downstream 73479 16294880 ~ 16296190 (-) True LOC113532372
TU335902 lncRNA downstream 129768 16239515 ~ 16239901 (-) True G283503
XR_004579867.1 lncRNA downstream 287548 16078768 ~ 16082121 (-) True LOC117599449
TU335704 lncRNA downstream 327090 16042362 ~ 16042579 (-) True G283307
TU335610 lncRNA downstream 615064 15754317 ~ 15754605 (-) True G283218
TU335937 lncRNA upstream 11440 16400921 ~ 16401948 (-) False alg12
TU335947 lncRNA upstream 58958 16448439 ~ 16448775 (-) False G283546
TU335948 lncRNA upstream 58958 16448439 ~ 16449766 (-) True G283546
TU335946 lncRNA upstream 59536 16449017 ~ 16449766 (-) False G283546
XR_004579992.1 lncRNA upstream 229231 16618712 ~ 16619718 (-) True LOC117599589
XM_034313186.1 mRNA downstream 590725 15756306 ~ 15778944 (-) False cerk
XM_026923051.2 mRNA downstream 590727 15756306 ~ 15778942 (-) True cerk
XM_026923836.2 mRNA downstream 805953 15554273 ~ 15563716 (-) False srr
XM_034313341.1 mRNA downstream 807983 15554273 ~ 15561686 (-) True srr
XM_026923726.2 mRNA downstream 824786 15539057 ~ 15544883 (-) True alg10
XM_034313344.1 mRNA upstream 11726 16401207 ~ 16406863 (-) True alg12
XM_026922599.2 mRNA upstream 60305 16449786 ~ 16452939 (-) True LOC113531729
XM_026922749.2 mRNA upstream 179214 16568695 ~ 16581436 (-) True il17rel
XM_026922863.2 mRNA upstream 232622 16622103 ~ 16647682 (-) False LOC113531895
XM_026922862.2 mRNA upstream 232622 16622103 ~ 16647682 (-) False LOC113531895
TU335292 other downstream 1192056 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 3788606 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 4709342 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 4781645 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 5110277 11238935 ~ 11259392 (-) True vegfab
TU336422 other upstream 569043 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 714084 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 1589304 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 1589304 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 1681266 18070747 ~ 18082361 (-) False tmem209

Expression Profile