Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC117597073 |
| length | 610 |
| RNA type | V_segment |
| GC content | 0.42 |
| exon number | 3 |
| gene id | LOC117597073 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 23479965 ~ 23483850 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0048884 | neuromast development | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU82581 | lncRNA | downstream | 25744 | 23453233 ~ 23454221 (-) | True | LOC113540115 |
| XR_003403997.2 | lncRNA | downstream | 25761 | 23453340 ~ 23454204 (-) | False | LOC113540115 |
| XR_004577997.1 | lncRNA | downstream | 25761 | 23453340 ~ 23454204 (-) | False | LOC113540115 |
| TU82494 | lncRNA | downstream | 82002 | 23396664 ~ 23397963 (-) | True | G69551 |
| TU82468 | lncRNA | downstream | 148430 | 23331016 ~ 23331535 (-) | False | retreg1 |
| TU82643 | lncRNA | upstream | 110481 | 23594331 ~ 23594544 (-) | True | G69649 |
| TU82692 | lncRNA | upstream | 167201 | 23651051 ~ 23651866 (-) | True | G69691 |
| TU82956 | lncRNA | upstream | 438256 | 23922106 ~ 23922538 (-) | True | G69916 |
| XR_004578012.1 | lncRNA | upstream | 447483 | 23931333 ~ 23932235 (-) | True | LOC117597086 |
| TU83094 | lncRNA | upstream | 654443 | 24138293 ~ 24138492 (-) | True | G70025 |
| XM_034303848.1 | mRNA | downstream | 16240 | 23446805 ~ 23463725 (-) | True | LOC113540011 |
| XM_034303847.1 | mRNA | downstream | 37222 | 23430300 ~ 23442743 (-) | True | LOC117597115 |
| XM_034303846.1 | mRNA | downstream | 61075 | 23409414 ~ 23418890 (-) | True | LOC113540008 |
| XM_026935903.2 | mRNA | downstream | 97077 | 23376456 ~ 23382888 (-) | True | nol7 |
| XM_026936871.2 | mRNA | downstream | 133392 | 23331017 ~ 23346573 (-) | True | retreg1 |
| XM_026936182.2 | mRNA | upstream | 53578 | 23537428 ~ 23544732 (-) | True | LOC113540016 |
| XM_026936998.2 | mRNA | upstream | 63320 | 23547170 ~ 23583496 (-) | True | amph |
| XM_034304072.1 | mRNA | upstream | 63320 | 23547170 ~ 23583495 (-) | False | amph |
| XM_026936999.2 | mRNA | upstream | 63320 | 23547170 ~ 23583495 (-) | False | amph |
| XM_026936706.2 | mRNA | upstream | 274534 | 23758384 ~ 23782113 (-) | True | fam49ba |
| XR_004578082.1 | other | downstream | 173031 | 23293951 ~ 23306934 (-) | False | lrrcc1 |
| TU82055 | other | downstream | 844213 | 22632185 ~ 22635752 (-) | False | LOC113540019 |
| TU81579 | other | downstream | 1544796 | 21934526 ~ 21935169 (-) | True | G68760 |
| trnaa-ugc | other | downstream | 2061726 | 21418168 ~ 21418239 (-) | True | trnaa-ugc |
| XR_004578104.1 | other | downstream | 2108955 | 21368250 ~ 21371010 (-) | True | LOC113539989 |
| TU82579 | other | upstream | 9529 | 23493379 ~ 23493919 (-) | True | G69592 |
| LOC117597074 | other | upstream | 11185 | 23495035 ~ 23495897 (-) | True | LOC117597074 |
| LOC117597075 | other | upstream | 12107 | 23495957 ~ 23497021 (-) | True | LOC117597075 |
| LOC113540012 | other | upstream | 29606 | 23513456 ~ 23514039 (-) | True | LOC113540012 |
| LOC117597116 | other | upstream | 30524 | 23514374 ~ 23514935 (-) | True | LOC117597116 |
