RNA id: LOC117597074


Basic Information

Item Value
RNA id LOC117597074
length 713
RNA type V_segment
GC content 0.38
exon number 2
gene id LOC117597074
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23495035 ~ 23495897 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttaataataataagaaaattacTGATACACCAAATCTGGGCTAATGTTGTCTGACAAGGTGGCCAATCCCCACcccaggaaatgacatcattacttTATAAAGGAAAGACTCGTGTTCTATactacattaatgcaaaaactCATCTGatacaactttattttatatccaAATCAACATGTTTATAGGCATATTTGCTGTTCTCTTCTCTTTGGTCACAGAAGCTGTTCTGGGACTGAAACTTGTACAAAAAGATCTCTCCATGACAAAAGAGGAGCGCAAAAGAGTGTCTATCAGCTGCAAAGTGACCGACTTATCCAGTAGCAACTATGTCCACTGGTACCAAAAGAAAGACAATGAAGCTCTCACAAGGATCCTATATGTCAAAAGTGGAAGCAAACCTGTTCATGATAACCATCCTGAAGCAAAGGACTTCGATGTGTGGCCACAGTCTGCTAATTATGATCTGAAGATAGCAAACCTGAAGAAAAGTCACTCTGCAGTTTATTACTGTGCCAGCTGGgagtacagcagtgacacagtGACAGTAAATATTCAAAGTGTGTACAAAAACCCTAATGGTTCACAACTACAACAGGAAATGATATGAAGTGTTAAAATGTGAATACACACAAGTCAAACTCTACAGGAGTCTCAAAAATATTCCTGGGAATATACTGGGAATGAAATGTAAGGTGTGGCTATATTT

Function

GO:

id name namespace
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation
ko05170 Human immunodeficiency virus 1 infection
ko05168 Herpes simplex virus 1 infection
ko05332 Graft-versus-host disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82581 lncRNA downstream 40814 23453233 ~ 23454221 (-) True LOC113540115
XR_003403997.2 lncRNA downstream 40831 23453340 ~ 23454204 (-) False LOC113540115
XR_004577997.1 lncRNA downstream 40831 23453340 ~ 23454204 (-) False LOC113540115
TU82494 lncRNA downstream 97072 23396664 ~ 23397963 (-) True G69551
TU82468 lncRNA downstream 163500 23331016 ~ 23331535 (-) False retreg1
TU82643 lncRNA upstream 98434 23594331 ~ 23594544 (-) True G69649
TU82692 lncRNA upstream 155154 23651051 ~ 23651866 (-) True G69691
TU82956 lncRNA upstream 426209 23922106 ~ 23922538 (-) True G69916
XR_004578012.1 lncRNA upstream 435436 23931333 ~ 23932235 (-) True LOC117597086
TU83094 lncRNA upstream 642396 24138293 ~ 24138492 (-) True G70025
XM_034303848.1 mRNA downstream 31310 23446805 ~ 23463725 (-) True LOC113540011
XM_034303847.1 mRNA downstream 52292 23430300 ~ 23442743 (-) True LOC117597115
XM_034303846.1 mRNA downstream 76145 23409414 ~ 23418890 (-) True LOC113540008
XM_026935903.2 mRNA downstream 112147 23376456 ~ 23382888 (-) True nol7
XM_026936871.2 mRNA downstream 148462 23331017 ~ 23346573 (-) True retreg1
XM_026936182.2 mRNA upstream 41531 23537428 ~ 23544732 (-) True LOC113540016
XM_026936998.2 mRNA upstream 51273 23547170 ~ 23583496 (-) True amph
XM_034304072.1 mRNA upstream 51273 23547170 ~ 23583495 (-) False amph
XM_026936999.2 mRNA upstream 51273 23547170 ~ 23583495 (-) False amph
XM_026936706.2 mRNA upstream 262487 23758384 ~ 23782113 (-) True fam49ba
TU82579 other downstream 1116 23493379 ~ 23493919 (-) True G69592
LOC117597073 other downstream 11185 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other downstream 14469 23480052 ~ 23480566 (-) False LOC117597073
XR_004578082.1 other downstream 188101 23293951 ~ 23306934 (-) False lrrcc1
TU82055 other downstream 859283 22632185 ~ 22635752 (-) False LOC113540019
LOC117597075 other upstream 60 23495957 ~ 23497021 (-) True LOC117597075
LOC113540012 other upstream 17559 23513456 ~ 23514039 (-) True LOC113540012
LOC117597116 other upstream 18477 23514374 ~ 23514935 (-) True LOC117597116
LOC113540114 other upstream 19802 23515699 ~ 23516359 (-) True LOC113540114
LOC113540013 other upstream 21033 23516930 ~ 23517670 (-) True LOC113540013

Expression Profile