Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC117597116 |
| length | 459 |
| RNA type | V_segment |
| GC content | 0.41 |
| exon number | 2 |
| gene id | LOC117597116 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 23514374 ~ 23514935 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU82581 | lncRNA | downstream | 60153 | 23453233 ~ 23454221 (-) | True | LOC113540115 |
| XR_003403997.2 | lncRNA | downstream | 60170 | 23453340 ~ 23454204 (-) | False | LOC113540115 |
| XR_004577997.1 | lncRNA | downstream | 60170 | 23453340 ~ 23454204 (-) | False | LOC113540115 |
| TU82494 | lncRNA | downstream | 116411 | 23396664 ~ 23397963 (-) | True | G69551 |
| TU82468 | lncRNA | downstream | 182839 | 23331016 ~ 23331535 (-) | False | retreg1 |
| TU82643 | lncRNA | upstream | 79396 | 23594331 ~ 23594544 (-) | True | G69649 |
| TU82692 | lncRNA | upstream | 136116 | 23651051 ~ 23651866 (-) | True | G69691 |
| TU82956 | lncRNA | upstream | 407171 | 23922106 ~ 23922538 (-) | True | G69916 |
| XR_004578012.1 | lncRNA | upstream | 416398 | 23931333 ~ 23932235 (-) | True | LOC117597086 |
| TU83094 | lncRNA | upstream | 623358 | 24138293 ~ 24138492 (-) | True | G70025 |
| XM_034303623.1 | mRNA | downstream | 9193 | 23466417 ~ 23505181 (-) | False | LOC113540113 |
| XM_026936355.2 | mRNA | downstream | 9193 | 23466417 ~ 23505181 (-) | True | LOC113540113 |
| XM_034303848.1 | mRNA | downstream | 50649 | 23446805 ~ 23463725 (-) | True | LOC113540011 |
| XM_034303847.1 | mRNA | downstream | 71631 | 23430300 ~ 23442743 (-) | True | LOC117597115 |
| XM_034303846.1 | mRNA | downstream | 95484 | 23409414 ~ 23418890 (-) | True | LOC113540008 |
| XM_026936182.2 | mRNA | upstream | 22493 | 23537428 ~ 23544732 (-) | True | LOC113540016 |
| XM_026936998.2 | mRNA | upstream | 32235 | 23547170 ~ 23583496 (-) | True | amph |
| XM_034304072.1 | mRNA | upstream | 32235 | 23547170 ~ 23583495 (-) | False | amph |
| XM_026936999.2 | mRNA | upstream | 32235 | 23547170 ~ 23583495 (-) | False | amph |
| XM_026936706.2 | mRNA | upstream | 243449 | 23758384 ~ 23782113 (-) | True | fam49ba |
| LOC113540012 | other | downstream | 335 | 23513456 ~ 23514039 (-) | True | LOC113540012 |
| LOC117597075 | other | downstream | 17353 | 23495957 ~ 23497021 (-) | True | LOC117597075 |
| LOC117597074 | other | downstream | 18477 | 23495035 ~ 23495897 (-) | True | LOC117597074 |
| TU82579 | other | downstream | 20455 | 23493379 ~ 23493919 (-) | True | G69592 |
| LOC117597073 | other | downstream | 30524 | 23479965 ~ 23483850 (-) | True | LOC117597073 |
| LOC113540114 | other | upstream | 764 | 23515699 ~ 23516359 (-) | True | LOC113540114 |
| LOC113540013 | other | upstream | 1995 | 23516930 ~ 23517670 (-) | True | LOC113540013 |
| LOC117597117 | other | upstream | 16303 | 23531238 ~ 23532016 (-) | True | LOC117597117 |
| XR_003404116.1 | other | upstream | 521783 | 24036718 ~ 24036854 (-) | True | LOC113540746 |
| TU83344 | other | upstream | 789439 | 24304374 ~ 24304926 (-) | True | G70255 |
