RNA id: TU73129



Basic Information


Item Value
RNA id TU73129
length 4360
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id LOC113540370
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10024585 ~ 10096068 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


AGAATATTCAGACATTGGAATTGGAatgtcaaaaaaattaaatatcctaaataaatgaaacataaataaaataaaaccacaaaatgaaaacaacaacaaaaatggactgtaaaaaaatattgtgaattCTTTATGCTTTAATTATTCATTGTCTGTGTTTTAGTACGTCATTATGGAAAGAGCGTATTCACAGTGTGACTTGCCATTCTACCTAGACCGTTAAGTTCACTTGTGCATTTGCATCATTTTGTGCAGAAGCAAGTTAtagtaatacatttatgttgtgtatatgtctgaTTAATCTCATATGTGTATAGGATGCGTTTGGGTGAGTTAATTAACCCACTAGTGAAGCGCTTCAGTTTACTGGTGTTGATTCactgttcagcttcagctcaTGTGGCTTAAGCGGCTCAATCCCTGACATTATTGACTATGACAGGATTATTTGAAACACTAGAActattctttctattttttttcttcttcaaaaaacatTGTTAATGCATTGTTAATATCTTGCATGCCATTTTTCAACAGAATGTAAGTATGTAGAGAGAGACTTTTTGTTACATTTGAGGATGCATTTAATGCATcagttttgcatatttacatgttttaaaaccCCTCAGACTCTCCACCCTCCCACCCAAAAACCCCAAACCCCTTCAGTCTTAAACTGATTTCAATCCATAGATCCATATGAAAGGCCGTGATCCAGTTTAAAGAGTCTTTCCTCTTGCTGATGTCCATTTTCTGAGTCTCAGTCTTCTGCTTGGTGAGAGCACTTTACGTTTTTTTCCGCATGTTGTGCTGATTGAACAAATGTTGCGTTATCGGGAAGAAGCTTGAGGGTGATGCATTTGTTTGACcttttgttggtgtgtgtgtgctgtggtgtaCAGGTCCTCAGGCTGTTTCTGTCCTCAGGTTTCTGAAGTGTCAGAAAATCTTGGCTGATCTGATGTGATCTCTCcgtgctgcatgtgtgtgagctgttctCCACCTGTAGCTCCTGTACTGCACACTGGCTCTTCACTCTCCTGCATcaccacattcactcattcactgctGTTTCTCACTTTCTACACTTTTTCCTGTCCTTAGCTCTACTGTGTTGACCTTCACATGGAAATAATCCAAACTGgtgggaagggaagggaagtgAAGTAGAGTTTACTGTCATTTCATCCATATActgccagttagtacatagtgaaacgaaacaatatttctccaggaccaaggcgctacataagacaaacacagaacaacacagaactacaagggactaaataaatttacacatgtggtttttagacacttcacgTGTTGTTTCACATGTAGCACGTGTGTTGATTTTAaggtgttttttccccccatgatTCTTTATCACGTGGTTTCCTCACGTGACTCGTTTATGTTCATGTAATCCCCCCACATGAGCCATTCATTGTCACGTGATTAATTTCCTTTCGCGTCACATTCTAATGGTTCTTTTTATGtgacttcatatttattttactttcacaAACTTCACACGTATAGAGCacttagtttcattattttttgtatgaTTTCTCCTACGATGTATTCATTCTCATATATGATAACATTCACACAACTCGCTGCGTTTTTACTTACCACTTTTTATTCTACCTCACCTCACAACAATAAAACGCAATTTTTCGTTttggtttaataaaaacatacgCAACAAAAAGCACAAGTCTGTTATTGACAGTTCAACAATAATCACTCTGATCATGTACTTTTCTTCTTACATTTCCTAAGAAATGAAGAACGTTCATCAATGATTTAAACTCATGAACGAATCATTAGTTTCAACCCGATTCACGCTCAGAAAAGCACATCAGACCTCGTCATCGTGATTAGAGAGACGTAACGCtttcaaatcacatttcctAGTTAGAGACTATAGAAATGATCCCTGAAAGTATAGTCTTAACCTCCCACTTCCTCAGACACTCGAGCACTTCAAATATCACACAGATGCTGAAGATGGCAGGTATTCTGGTACGTATTTAGATTCTGCAcataacacacatgcaaatgaacAGCTATCTACACAGACTATCCAAAAAACATGACTGGAAAACTGACATGAATTCATCTCgaataaaagcagaaaattgCTCTTTAtacgaatgaatgaacattcCCATCATGCTTTGCGCCCACAGGACTGAGTTACTTCCGCAGTTAAAGGATCCTGCAGTTCCTCGATCAGACGCCAGGTGGAAGAACACACATAGCTTTAGGGTCGTTTTTTCTCGGTCATCACacgggtgagagagagagaatgtaaagagagagagagagagagagagaggtgtagtCGGACACTTGATGGATGATCACTTGCTCCATTTGTCATTGAACTGACATTATGGAGtcaagaaagaaacacacacacacacacactccatttatatacacacagtcattTCACTTATAGCTATTTGTTCTAAGGTTGCTTTAGAAGGTCACATGATGTCATGTGTCTGCTCTAAAAACGCAGTAAGTTTCCTACAAACCCCCTCTTTCCTGTCGAGTcgcttatattttattcttctgtgtttttacCTCAGCCAAAACCGTTTGTTTTTTCAGGATTGCTCGCTTGTGTGTCCTTTCCTTCCAGAAACATCACGTGACTTTCACATGTGACTAATCACAACTCGTGAGCAGTTCACACGTGGCTTTTAGACCACTTCACGTTTCACATTCAGTGCATGTTTATTTTCACGTGTGATTTTTTCCcatgattcatttttacttGATTTTCTCACGTGATGATGATCCACATGatccatttattttcacgtgtgatatttttaaccattcatttatttctatgtGATTCTCCTAAAACTTATCTTAACTTTAACTTTACACAAGTAGGgcatatagttttattttccaCGTATGAGATCTTACatgatgtaattatttttatatgtgatgatattcacatgatgtcatgtGTTTTTACTTCTAAGTTATATATCTAAGAAAGAAGGACATCAAAAGTAAGCAAAATAATTATGTTCAGACTCAATCATAGCTgtataataggaaaaaaaagttatacatCTGCCATCAGCAGCATAAAAAACACCTAATTTATAATTTCAGGATAATCACTCTGATCATGTACTCTTCTTCTCACTCTTCCTAAGAAGTGACAAATGTTCATCAATAATTAAAACTTGTGAAAGAATCACCAGCTTCAACCTGACTCATGCTCAGAAGAGCACATCAGTCCTCATCATTGTGATTAGAGAGACATAACACtttcaaatcacatttcctAGTTAAATACTATAGAAATAATTCTTGAAAGTATAGTCTTAACCTCTCACTTCCTCAGACAGTCGAGCACTTCAAATATCACACAGATGCTGAAGATTGCAGGTTTTATATtctacttgatttttttttaccaatgaATGAACATTCCCATCATGCTTTGCGCCCACAGGGCTGAGTTACTTCCGCAGTTAAAGGATCCTGCAGTTCCTTGATCAAATGCCAGGTAGAAGAACATACACAGCTTTAGGACCTTCAGTTGAAGAAGTATCAACTTTTTTCTACAAGTGGAGAATGAGTCATGAGATGAGTAGTGTGGTTACTGATACACAACACTCTCAAAATGTGTTTCCTACTTAGAAATAAGAGCTGTAACACTGGCAAGTctaaattttatttcacttagaAAACGTAATGCTTCAAGCTATTCATAAACATACGCATTTAATActaccaaaaaagaaaaataacccTGTGAATTAAGCAGGAATTGTAACACccagtttatttattcacttaccaaattacagacaaataaatcataaaagcCACCATAACTAGGCATTCACCAAACCTATATGAAGTTTATTATCAACACCAACCAGTAacagccttaaaaaaaaaaaacctctgctTTTCCCACAATGAAGCTACTAATCACTCTGATCATGTACTTCTCCTGTTTCATAAGAAACAGAGAACGTTCATCAATGATTAAAGCTCATGACAAAATCACTAGCTAAAATCCGATTCACGCTCAGAGAAATACATCAAAGCTCATCATCGTGATTAGAGAGACGTAACGCtttcaaatcacatttcctAGTTAGAGACATCACTCTGATCATGTACTTCTCCTCTCATGTTCCATAAGAAACAGAGAACGTTCATCAATGACTAAAGCTCATGATAAAATCACTAGCTAAAATCCGATTCACGCTCAGAGAAATACATCAAAACTCATCATCGTGATTAGAGAGACGTAACGCtttcaaatcacatttcctAGTTAGAGACTATAGAAATG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU73068 lncRNA upstream 55685 9881068 ~ 9968900 (+) True G61689
TU73062 lncRNA upstream 55756 9881068 ~ 9968829 (+) False G61689
TU73079 lncRNA upstream 105802 9914235 ~ 9918783 (+) True G61696
TU73080 lncRNA upstream 107207 9914235 ~ 9917378 (+) False G61696
TU73000 lncRNA upstream 431842 9578364 ~ 9592743 (+) True G61638
TU73125 lncRNA downstream 4833 10046592 ~ 10047551 (+) True G61735
XR_004577930.1 lncRNA downstream 30616 10072375 ~ 10096068 (+) False LOC113540370
XR_003404024.2 lncRNA downstream 30616 10072375 ~ 10096068 (+) False LOC113540370
TU73179 lncRNA downstream 123770 10165529 ~ 10297564 (+) True G61785
TU73180 lncRNA downstream 182363 10224122 ~ 10266279 (+) False G61786
XM_026936955.2 mRNA upstream 27537 9992956 ~ 9997048 (+) True ino80b
XM_026936956.2 mRNA upstream 27537 9992956 ~ 9997048 (+) False ino80b
XM_034303761.1 mRNA upstream 57753 9940656 ~ 9966832 (+) False clcn3
XM_034303828.1 mRNA downstream 182023 10223782 ~ 10224603 (+) True LOC117597106
XM_034303251.1 mRNA downstream 194993 10236752 ~ 10266758 (+) False LOC113538341
XM_034303250.1 mRNA downstream 206778 10248537 ~ 10266758 (+) True LOC113538341
XM_034303830.1 mRNA downstream 229084 10270843 ~ 10280812 (+) True LOC117597107
XM_026936741.2 mRNA downstream 321231 10362990 ~ 10370654 (+) True LOC113540310
trnas-gcu other upstream 112107 9912397 ~ 9912478 (+) True trnas-gcu
XR_004578013.1 other upstream 143359 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other upstream 143359 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_003403991.2 other upstream 192305 9807321 ~ 9832280 (+) False gal3st3
XR_004578067.1 other upstream 250536 9758460 ~ 9774049 (+) False rbm14b
TU73183 other downstream 126087 10167846 ~ 10266279 (+) True G61786
trnak-cuu_4 other downstream 432859 10474618 ~ 10474690 (+) True trnak-cuu_4
trnak-cuu_5 other downstream 434098 10475857 ~ 10475929 (+) True trnak-cuu_5
trnak-cuu_6 other downstream 435330 10477089 ~ 10477162 (+) True trnak-cuu_6
trnak-cuu_7 other downstream 436543 10478302 ~ 10478374 (+) True trnak-cuu_7

Expression Profile


TU73129 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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TU73129 Expression in each Bioproject

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TU73129 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 16.
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