Item | Value |
---|---|
RNA id | TU73129 |
length | 4360 |
lncRNA type | inter_gene |
GC content | 0.37 |
exon number | 4 |
gene id | LOC113540370 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047598.1 |
NCBI id | CM018544.1 |
chromosome length | 33267568 |
location | 10024585 ~ 10096068 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU73068 | lncRNA | upstream | 55685 | 9881068 ~ 9968900 (+) | True | G61689 |
TU73062 | lncRNA | upstream | 55756 | 9881068 ~ 9968829 (+) | False | G61689 |
TU73079 | lncRNA | upstream | 105802 | 9914235 ~ 9918783 (+) | True | G61696 |
TU73080 | lncRNA | upstream | 107207 | 9914235 ~ 9917378 (+) | False | G61696 |
TU73000 | lncRNA | upstream | 431842 | 9578364 ~ 9592743 (+) | True | G61638 |
TU73125 | lncRNA | downstream | 4833 | 10046592 ~ 10047551 (+) | True | G61735 |
XR_004577930.1 | lncRNA | downstream | 30616 | 10072375 ~ 10096068 (+) | False | LOC113540370 |
XR_003404024.2 | lncRNA | downstream | 30616 | 10072375 ~ 10096068 (+) | False | LOC113540370 |
TU73179 | lncRNA | downstream | 123770 | 10165529 ~ 10297564 (+) | True | G61785 |
TU73180 | lncRNA | downstream | 182363 | 10224122 ~ 10266279 (+) | False | G61786 |
XM_026936955.2 | mRNA | upstream | 27537 | 9992956 ~ 9997048 (+) | True | ino80b |
XM_026936956.2 | mRNA | upstream | 27537 | 9992956 ~ 9997048 (+) | False | ino80b |
XM_034303761.1 | mRNA | upstream | 57753 | 9940656 ~ 9966832 (+) | False | clcn3 |
XM_034303828.1 | mRNA | downstream | 182023 | 10223782 ~ 10224603 (+) | True | LOC117597106 |
XM_034303251.1 | mRNA | downstream | 194993 | 10236752 ~ 10266758 (+) | False | LOC113538341 |
XM_034303250.1 | mRNA | downstream | 206778 | 10248537 ~ 10266758 (+) | True | LOC113538341 |
XM_034303830.1 | mRNA | downstream | 229084 | 10270843 ~ 10280812 (+) | True | LOC117597107 |
XM_026936741.2 | mRNA | downstream | 321231 | 10362990 ~ 10370654 (+) | True | LOC113540310 |
trnas-gcu | other | upstream | 112107 | 9912397 ~ 9912478 (+) | True | trnas-gcu |
XR_004578013.1 | other | upstream | 143359 | 9860894 ~ 9881226 (+) | False | si:ch211-168d1.3 |
XR_004578014.1 | other | upstream | 143359 | 9860894 ~ 9881226 (+) | False | si:ch211-168d1.3 |
XR_003403991.2 | other | upstream | 192305 | 9807321 ~ 9832280 (+) | False | gal3st3 |
XR_004578067.1 | other | upstream | 250536 | 9758460 ~ 9774049 (+) | False | rbm14b |
TU73183 | other | downstream | 126087 | 10167846 ~ 10266279 (+) | True | G61786 |
trnak-cuu_4 | other | downstream | 432859 | 10474618 ~ 10474690 (+) | True | trnak-cuu_4 |
trnak-cuu_5 | other | downstream | 434098 | 10475857 ~ 10475929 (+) | True | trnak-cuu_5 |
trnak-cuu_6 | other | downstream | 435330 | 10477089 ~ 10477162 (+) | True | trnak-cuu_6 |
trnak-cuu_7 | other | downstream | 436543 | 10478302 ~ 10478374 (+) | True | trnak-cuu_7 |