RNA id: TU74467


Basic Information

Item Value
RNA id TU74467
length 3712
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G62818
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11698687 ~ 11705655 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTAGCTTTCATGAGTGCCAGTAGTCAgagtgtgtctgtctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacggcggcGTTTCACTGCGATGTTGAAAGGGGATGATAATATAGTAGTAGTAGAGCAAtgtagagagaaacagacatgcTGCTTAAACACACTctgctgtttttaaattgcGTGTCGCCTATTTTCCATCTGCTACATTCCGGGAAAATGGGTTTGAATTGTTGGGTAATTGGCTCCTTTTATAAAAATTACTGgtctgtgtgtaaaaaaaaaaaataccaaagaGAAGGAAGAAGATGTGCAAACATTAACAGCAGCCTTCTCACTGTGATCAGGTGATGGACGTCAGGGCATCGTCACcatgcattcattcacactGCGACAAAACATCCAGCGGCCATTTGTTTACGGTCAGTGGTCATGACTGAGTCTGAATTTACTGGAGCCAATCATTTAGATTTGGTGCTTTAATGCTCCGTCACTAAGGTGCAGGTTGTCCGATGCGCCCCAAGCAATTAAgcaacacagacacacccacaaacatGAGTCCatcttgctttaaaaaaaaaagtacttttacTGGTTTGTACACTTCAAGAACACTGACCCACTGAATGAAGAAGGGAATCTTGTTTGTGAAGTAGATTCTGAGGATTCCCAATAATCCCAGGATTGCTTTGTGACATCAGAGTGCAGTCAGTTCTCCCAGCCAATGACAGGCTCCTTTCATAAATACACATCACCCCACTcttctaagttttttttttttggtcaattCAGAGTCAGTGAATCATGGGTAAAGGGTGTGTGCACCAAATTAATGAGAGAAACTACTAAGTGCATGGCAGTGATTTATTTAGTCTCGCTGCATTCGAAAAGACTGAATGAAACATGTACTTGTCGCTTGCTAGTTTGAATGCAAGATGACCCGAGGAGAGCTCCCACACAGTCCCACACACAGATATATGCATATGCGCTTACGTGCGCATGACTGACATTTCCCTGCTCATGCCTAAGCAGCTTGTAGCCATCCTGCCACCTcgtcttctctctctttcctccagaGAAATGACTAACAGGCAAAGAGGAGCTTATTAAAATAAGGATCACATTATCACCTAGACGGCAGAAGAGTAAAGAATAGAGCTGGAGTTCGACCTCACATGCCATTATGCTCACCATAGTGActagagtgagacagaaagcaTAAAAACAAAGCCCTTCAAACGGACATCAGCTGCCTCTTCCACGGAAACTATTCTTTGCCAGCGCTTCCATGACAACACTCGCACATTGCAGATATTTGTTTTATCcaagagataaaaagaaaacttGGCAATAAATATCAGGCACTAATTTCTTTGAATAATATTGGCACACACAGTTCTTCACTCCCCCCCAAAGCCAGAGAGAGGCTTGTAACATGGCTACGTGCCTGGAAAGTGGGAGGGGGTGTAAAAGAGATAGCATATGTTCACAGCAAATTGAAATCACAACTGTTAATTTGGCAGCTATAATTGCAGAATGCTGTTAAAGTAAATCACGTCTGCTTTCGTTTAAGGAACTCATGGCGTTCAGATGAATATAACTGATGCACAAATCACGACAAGTCCTGTTCCTAGAGCTTGCATACCGTGTCATAttgaaattcaaacaaaaacatctaTTGGCAGCTCGAAATCATAGCATGTCGCGTTTTAGACAAAGCTGCACATCAATGTTTCTCCACTTCCCCCCCGGGCtgaaaaatgcaatattattGGTGGGAAAGCAtctcttagttttttttttttcctgcctttaacatactttgacatctcaaaacaaatatattttcactaaAACAAGGTTCATCAAAACTATTTAATCTTGCCTTGGGTATCTTCCTGAAAAGATATTATTAAATAAGGAGCCAGTTTGTGAACATCTCatgatttgatcaagttgttggaaaAGTTGCATGCTGTAGCAAAACAgccataagcctaatcaattcagtttgtaatcagataccggctgtcaaaatgtcagccatgtgcTGGCGCCTCAGTCGGAATGAaatcttttaatgtcattttcagccttttcacttttggagggAACCTGATTTTAAAATCCTACAACTTTTCTTCTGGTTGAGATACAAGGagaagagaaacatatttcagttcaggaaaacctgtagttttctatagtagcaactatatatatagtagaaaaggTCAAAAGTTCACCATGTGAATAgtttttcccaggctgccacacatatttGCATGTGCAtgccagtttgtttgttttttttattactcttgGCTAAAAAAGTTTTACcttatatttgaaaaatattctAAATTACTCAAATACTGATATCAAACTTCAGAGGCCTGTTTCTTAAAACAAAGTCTTTTCAATCAACATTTAAAAGAGCATTATATGTCCTGTCTAATATCAGTATTAACAAGAAGCTAAGACCCTGTTTTCAGGCGtatataaaactgaaaatgatagAACAGGTCACATGTAAGCGCTTAGATAAAAGGTCTAACAGGACTGGCCTCCCTAATGTCTCATTTGCACGGGGTGGGTCGCACTAGTTAGACTACAATACAGACATATTTAGTCTAGAAGGGCAGAGGATCAAGCAGAGGAACTACAATTTTCTTGAACTGGCAGGAGGAATGAAATCAAGAGCACAAGAGCCTGAGTGTGGGAGTGCCTATATGGCTTTCCAATGCAACCGTCTGCAAACACACAGGACGAAAAGATTACAGACGGTTTAAAGTTGAACCGAAAAGCAAGGCTGCCACCAATAACAAGTTCACTAAAGATCTCAAAAAAGTTGGTGTCTGAATTATTGAAAACACATCCAAACATGCAGAGACCAGCTCAGTGTATGAATACAATTCAGCAACAACCATACACACTAAGTTAAAGTGCTTGGAAATGCCAAACATCACAATTTACTggagattattattaaaaaaaaaaaatttggctcGCTTCACAACGGTACTGAAACCAAAGAGCTCAACAATGATTCATTCACGAAAAGCAGTGACGTGTCTAATGCTGCGAGAGCGGGACTAACCAGACAGGACTAGCCTGGGTGGAGAACAGCGTCCTGCCCTTGCCTCCACACCCAGCTCGAACCCAAACACAGTGCTCAGGGCCATCTTAGGAACATAGCAAAGCAATGTCGTCACTCCAGACATGAAACCTGATTTAGAAACAAATGATTCGCCAAAAACACAATTCTCAGGACATGATCAAATGAACCTGTGACGTATAAAACACTGACAagccaaaaattaaaaaaaaaaaaaaaaaaaaaaaacaataaaaaatgagtAACAGGCTGATTTGATACCCTGTTgtgatgtggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaaagagaaaaagccaTGTCAGATAGTAATGTGAAGAGTCTTGGCAAAAATAATGTTCTCGCATCTCCTGTACTCCTCCCttttgcatttctctctctcttcatacGCTTCAGCactcctcctccagctccctGAATCTGATGGTGGGTGGTGTCTTTGTCTCTTCTCTTGCTCGATTTGCTCGGTGGGTCATTCTGCCATCCTGTTTGGCACGCCGCTACACGGCGCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74502 lncRNA downstream 5369 11691195 ~ 11693318 (-) True G62850
TU74501 lncRNA downstream 9736 11685914 ~ 11688951 (-) True G62849
TU74498 lncRNA downstream 15671 11681668 ~ 11683016 (-) True G62846
TU74484 lncRNA downstream 87030 11611120 ~ 11611657 (-) True G62832
TU74483 lncRNA downstream 88566 11609921 ~ 11610121 (-) True G62831
TU74674 lncRNA upstream 161795 11867450 ~ 11867703 (-) True G63015
TU74690 lncRNA upstream 192190 11897845 ~ 11898101 (-) True G63031
TU74670 lncRNA upstream 231116 11936771 ~ 11966896 (-) False htr2cl1
TU74717 lncRNA upstream 267056 11972711 ~ 11972947 (-) True G63058
TU74721 lncRNA upstream 298352 12004007 ~ 12004319 (-) True G63062
XM_026937343.2 mRNA downstream 71842 11622885 ~ 11626845 (-) True rab39bb
XM_034303833.1 mRNA downstream 163444 11524826 ~ 11535243 (-) True LOC117597110
XM_034303241.1 mRNA downstream 179036 11509731 ~ 11519651 (-) False LOC113540344
XM_034303303.1 mRNA upstream 11690 11717345 ~ 11796600 (-) False si:dkey-172j4.3
XM_034303300.1 mRNA upstream 11690 11717345 ~ 11796600 (-) True si:dkey-172j4.3
XM_034303301.1 mRNA upstream 11690 11717345 ~ 11751713 (-) False si:dkey-172j4.3
XM_034303299.1 mRNA upstream 11690 11717345 ~ 11743538 (-) False si:dkey-172j4.3
XM_034303298.1 mRNA upstream 11690 11717345 ~ 11743538 (-) False si:dkey-172j4.3
TU74378 other downstream 163674 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 484265 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 485753 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 489854 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 516374 11177711 ~ 11182313 (-) False mrpl52
TU74889 other upstream 541619 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 566563 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 566717 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 566717 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 1498618 13204273 ~ 13204462 (-) True LOC113540725

Expression Profile