RNA id: TU74484


Basic Information

Item Value
RNA id TU74484
length 538
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G62832
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11611120 ~ 11611657 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggctgattggggTATTTGTGGTATAACACAGTAATATGTAAAAGAGTTGTTGTGTAGCCGCTATTACTAAATAACACTAAATGGTAGATGGTTGTAACTTTAGTCCACCGAGGTGAGCGTGGTGATGAACCCAAGTGcagctttatttaacaaagtgaaaaccaaaatacaaataaagacttgacTTAACTTGGACAGACTTGGCTTGGCATGAACAAACTTGACTACAACAGACTGCAGGTTACAACATCAATACACGACAAGAGACAATGGCTACATGAGGGCTATATACACACCAAACAATCAAGGACACATGAcataatcaaccaatcagaacaagacACTTGAAAccaaggaaccaatcagaacatgacacaaaGACAAGGGTAACACATGACAAGATCACAggaggggcaaggaacacatgacTAGACAGGAACCATGActaaactccaaaataaaagacatgagagcaatgaacaagaaacacaaacaaaacccaaacccCACGTTACATATCCCCCCCTCTAAGGGTGGC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00071 Fatty acid degradation
ko00280 Valine, leucine and isoleucine degradation
ko00330 Arginine and proline metabolism
ko00380 Tryptophan metabolism
ko04146 Peroxisome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74483 lncRNA downstream 999 11609921 ~ 11610121 (-) True G62831
TU74482 lncRNA downstream 1346 11609548 ~ 11609774 (-) True G62830
TU74459 lncRNA downstream 3173 11557584 ~ 11607947 (-) False G62813
TU74466 lncRNA upstream 44973 11656630 ~ 11705457 (-) False G62817
TU74465 lncRNA upstream 51341 11662998 ~ 11705457 (-) True G62817
TU74498 lncRNA upstream 70011 11681668 ~ 11683016 (-) True G62846
TU74501 lncRNA upstream 74257 11685914 ~ 11688951 (-) True G62849
TU74502 lncRNA upstream 79538 11691195 ~ 11693318 (-) True G62850
XM_034303833.1 mRNA downstream 75877 11524826 ~ 11535243 (-) True LOC117597110
XM_034303241.1 mRNA downstream 91469 11509731 ~ 11519651 (-) False LOC113540344
XM_034303239.1 mRNA downstream 92195 11509731 ~ 11518925 (-) True LOC113540344
XM_034303240.1 mRNA downstream 92466 11509731 ~ 11518654 (-) False LOC113540344
XM_026936778.2 mRNA downstream 178868 11426298 ~ 11432252 (-) True syt4
XM_026937343.2 mRNA upstream 11228 11622885 ~ 11626845 (-) True rab39bb
XM_034303303.1 mRNA upstream 105688 11717345 ~ 11796600 (-) False si:dkey-172j4.3
XM_034303300.1 mRNA upstream 105688 11717345 ~ 11796600 (-) True si:dkey-172j4.3
XM_034303301.1 mRNA upstream 105688 11717345 ~ 11751713 (-) False si:dkey-172j4.3
XM_034303299.1 mRNA upstream 105688 11717345 ~ 11743538 (-) False si:dkey-172j4.3
TU74378 other downstream 76107 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 396698 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 398186 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 402287 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 428807 11177711 ~ 11182313 (-) False mrpl52
TU74889 other upstream 635617 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 660561 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 660715 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 660715 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 1592616 13204273 ~ 13204462 (-) True LOC113540725

Expression Profile