RNA id: TU74501


Basic Information

Item Value
RNA id TU74501
length 2884
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G62849
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11685914 ~ 11688951 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaaggaagagaagggtgaagaaaacagaaaataggaGCAAGGAAagggtaaaagaaaaaaaaaaaaaaaaagtggaaaaggaAGCTTTTGGCTTTGCTACCGAACTTTCCAGGACCATATCAGACTAGCAGCCTGAAACTACGAGCTTTAACATGAACCATGTAAGCATGAAGAGATTCCACTATTTCTAGAAACACAGTGTTTAAACACTTAAAGTACTTGCTCGTTCGGTGTTACCCACATTGTATTAACTCACAACTCCATATGCTGATGTGAAAATCATAACCACATAATAATCTTTAACACTGGTCCTTCTTCATTCAAGTTGTGTACAGTCAAATATCATCATAAAATGAGTGCACGAAAACTCCAGCAGCTTAATTTAGATTATTAAGCTGCAAATCCAGCATTAGTCAGGCTGAAGTGTTACGCTCAATTTTACACACTCTGACCAGATATTACATGTATTGTACAGAACTCTGACTGTGGAATTTGAGCACACTCGTATTACAATCAAATTTAACCATATGCAACTTCATATTTAAGTCCATGtcttttcctcacacacacagagataaagaGGATTTAGAACGGCTGGATGGATAGTGCCTACATCCCTAGTGAAGCAAACAGTAGATGAGTTTTAGCTCCACATCCCCCGTCTCGTGATTTTGACTTGATGGGTTTTATCGCATGTCCACAGCTGGCACATGTGAATCTCCCATTTATGAGTGTAAGGTAGATACTAAACTGCCATATTTTGGTGCATTATATGACACCCAAGGCCTGAGAACTTGAAGAGTACTTCAGAATAGCACAAAAATGGACCAGAATCCTCTACATCTGCCATTCAGAATAGTGGCTAAATAAGTTTAGTTTGTGCCATAGATCTGTAAAAGGAAGCACTTCACCCAGCTCCATTAAAGCACGACAGAGCAGAGAGGTTAGCTGAGCAGAAGGTTAAAGGTTATTTAGCTTGCTGACTGATACAGCAGTGGGTTAGATGCTTAAATAAGCTCCTTTGGTTGGAATTTTACCAGCTGCTGGCTTCACATCGTTATTGGCACCTTGAGTCCCAAACACTGCATCAAAATCTACATTCATGGTGGAAATATGAGCAGCCTGCTGGGGAACGCCGCTCTCTAGACCTGAGGACAAAATCACATGCATAGACAGAACCTTAGACCTGGCTCGTACACTGGTTGAATGTTCCATCCTGACCTTCTGCACAGGTACATGTATACAATAACAAAATGCCTTTCACTGTATTTTACTTAGTCATAAGTTTAGATCTGCATATAACCAGGACCCGCTACTGTTTCACCCCTGACTGCTCAGATATACAGGGTTCACACTGATGCGTCAAAGTTTCATTCTCACCCTTATATGGACTTTAATTTAAGCACTACTTTCTTGTATTCAAGATCTACCCATGAGATGTTGCTTGACAAACTACAGCAGCTGTCAAGAAAGggcctttctttcttcttcacaCCAGATAGAGGCTTTCTAAAATCAAATAACCAGATCAactaattaagttaattaaattAGATATTTTGTGACATGATCTCTATatcttgaattcttgaatctgattagtcagaagtagtgaataattttgtataacagcaccacTGATCATGGTCCtgtctgcaaggcaaatcacaggtttacgtTAATGTACTCATGTTATCACTtcttttaacaaagaaaaactgaattgttgatatggtgaagttttctgtgaggagatttaacttttatggaagaggggtacaactgtttatagctactatattgtaagtgttaacaggaactgacttgtttcatggatgctCCACATCACCACatgtaacaaacaaaaaatatttgatgtgttgtttttaacaaataaaaaaatatataatctttGGCAAAATCACTGtggtacaaaataaaaatcaaataaaacacaacaggatgtgctgttagaagaaaataatcagtgtagGTGGCTAACCCACAAGCTGCGAtgggccacatcacatcacccagTCACTCACTATTATCCAATGACTGCACACCTTATGGTgccctgcagtgttttattccctgtGTGAAACATCAAGTTACACTTTCTGAGCATCAGTGGTACCGTCAGTATAGCAATGAAGGTCTCAAATGCTATTCACAGCtgcaataaatattaaatacttgAATACATTTTCCTGATGCACTATATCATAGGCTTTATTATCAGAGTACATCATGTAGTGCAGCCATGTTACATATGAAACGTTTTATCATTTGTCTTGCTCTCCTGTGTATATCCTTTCTTCGAGCCCTTCTGTTCATCCACCACATGAGAGCCAACAAAACTGTCCCTCAGCCCTTCTTCCACGTCAACAATGTCCTcatttcacacttttattttttaaggcaGGCCAGATGGATGAGCACAACCATTCAGCACAGGTCACACCAACACTAACGCCTGCAACGGTCAaaccactcacacactgtaGGCACTGCATTCAGATCAGTACACGAGGGGCTATTTAAAAACCGACATCATCTGAGGATCTAAGTGAACAAATGAGAGcaAGCCATGGCCAGGAGTCGAAAAAAGCACTGCTGTCCTGCTCTCTGGGGAGTGGTGAGATTactctttcccctgtcaatcagagccaATCATGAACATGTTTGAAGTTATGTATGTAGAAGGAGGCAGattgcacttttttccccccgaGTGTTCAACTGTCCTGTGACGTAGCATGAGCTGCAGGTCAAAAAGGTGcgcttttatctgtttactaGCTGCTGTGTAATAGGCTAATTCTAGCTAGTGGTCAGGAAATGGTAACAACaaaaattgggagaaaatggggttttaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74498 lncRNA downstream 2898 11681668 ~ 11683016 (-) True G62846
TU74484 lncRNA downstream 74257 11611120 ~ 11611657 (-) True G62832
TU74483 lncRNA downstream 75793 11609921 ~ 11610121 (-) True G62831
TU74482 lncRNA downstream 76140 11609548 ~ 11609774 (-) True G62830
TU74456 lncRNA downstream 77967 11581571 ~ 11607947 (-) False G62813
TU74502 lncRNA upstream 2244 11691195 ~ 11693318 (-) True G62850
TU74467 lncRNA upstream 9736 11698687 ~ 11705655 (-) True G62818
TU74674 lncRNA upstream 178499 11867450 ~ 11867703 (-) True G63015
TU74690 lncRNA upstream 208894 11897845 ~ 11898101 (-) True G63031
TU74670 lncRNA upstream 247820 11936771 ~ 11966896 (-) False htr2cl1
XM_026937343.2 mRNA downstream 59069 11622885 ~ 11626845 (-) True rab39bb
XM_034303833.1 mRNA downstream 150671 11524826 ~ 11535243 (-) True LOC117597110
XM_034303241.1 mRNA downstream 166263 11509731 ~ 11519651 (-) False LOC113540344
XM_034303303.1 mRNA upstream 28394 11717345 ~ 11796600 (-) False si:dkey-172j4.3
XM_034303300.1 mRNA upstream 28394 11717345 ~ 11796600 (-) True si:dkey-172j4.3
XM_034303301.1 mRNA upstream 28394 11717345 ~ 11751713 (-) False si:dkey-172j4.3
XM_034303299.1 mRNA upstream 28394 11717345 ~ 11743538 (-) False si:dkey-172j4.3
XM_034303298.1 mRNA upstream 28394 11717345 ~ 11743538 (-) False si:dkey-172j4.3
TU74378 other downstream 150901 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 471492 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 472980 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 477081 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 503601 11177711 ~ 11182313 (-) False mrpl52
TU74889 other upstream 558323 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 583267 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 583421 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 583421 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 1515322 13204273 ~ 13204462 (-) True LOC113540725

Expression Profile