RNA id: XM_026935929.2


Basic Information

Item Value
RNA id XM_026935929.2
length 1474
RNA type mRNA
GC content 0.48
exon number 4
gene id si:dkey-165a24.9
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12246962 ~ 12249754 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTAGAAGTGGCTTCCTGCTGGGGgaaatgatcaaaaaaaaatcagacaagcCCTTCATGGAGGCATGAATTATGCACTCTGACTCTCACAGGTCCTTGCACACTGAGCAGAGTCTCCTGTCATAGGCAGATGCAAGGGACAACACAAGCACTGCAACGACAGCTGGAGCGGTTAGAGCTCAGCAGTGTGAACAGCTAAATGTTCAAACCTTCAAATGTCTTTCACATGGGAAAGCCATAGAAATCATGTTTATGAACCTGACAAATGGAAGCTGCCACATTCCACTGGAGACAGATCGGGTTGGACTCACCTACATCTACAGCCTGGCTTTCTCTCTGGGTCTGCCAGCAAATCTGCTTTCACTGTGGGGACTTTACCAGCTGGGCCGCTCAAGTGGAGGTGGCACTCAGCTGGTTTATATCCTCAATCTCCTGCTGTCAGATCTTCTTCAGTTGCTCACCTTGCCTCTGTGGATCCTCTACCTCCAGAGAGATCATCGGTGGCCCTATGGTTCCATCGCCTGTCAGTTGGTGGGCTATGTCTTCTACGTGAACGTCTATGCAAGCATTGCCTTTCTGTGTCTCATAGCACTGGACCGCTGTCTGGCCATTGTATACCCATTAAGCAGCCGTCGTGTGAGGAAGGTACGGCTGTCTGCGTTCTCTGGAGTGGTCGTCTGGACGCTTGTATTCCTGTTCTGTCTAATTGGTCTCTACCCATCTGTATTTGAGCCCCAGAAGGGCTTGTGTCTAGAGCAGTATCCTGTCACTCCAAGATACGCTTACTTTAAAATAGCCACGGTGGTACTGGGTTTCCTGATGCCATGCTCTATACTTGGCTGCACTTCTGCCAGAATCGGGGTAACACTCCGCAACTCCCCTTCCATCTCTGATCACGAGCGCAACAAAATAGTGGGCACCCTAACGgtcatcaccatcatcttcatcgTGGTCTTCGGCCCCTATCACATGGTGGGCGGTTATAGATTCGTAGCACTGCTTCTAACTGAAGACCAGTGTACGTTGGAACGCTCTATCTACCTGTACTACAGGATCTGCTATGGACTAACCAGTCTAAATACACTGTTAGATCCTCTCTTCTATATTTTCCTTTGTCAGAATGCTCGTCTTGAGCTCCGGAGATCTCTCCCCTGCCTGCCATTCCCACACAGGTCTGAGGGTTCGTGACTTTTGACCCAGAAGATGTGTAGCTGCCAGGGGCAGACTGGTTTcattatgtgaaaaaaaaaagcctgcaagggttttttttatgaaaaaagatGCTTAAAAGGCTTATCAGGTATTTTTGATTGATGACCTGTCAGATCTCTAACTGCAGCTGTTGTGTCACTGGGTCTGCTGGTATGAGACACAAACGAATACTATGTGCCGTGCTGCGATGTGAATTCCTGTGACGGCAACACCTTCAGCCAAGCATGCAGGCTCTGAAACCAAATAAAAAGCTTCACGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74852 lncRNA downstream 123952 12067332 ~ 12123010 (-) True G63174
TU74721 lncRNA downstream 242643 12004007 ~ 12004319 (-) True G63062
TU74717 lncRNA downstream 274015 11972711 ~ 11972947 (-) True G63058
TU74670 lncRNA downstream 280066 11936771 ~ 11966896 (-) False htr2cl1
TU74690 lncRNA downstream 348861 11897845 ~ 11898101 (-) True G63031
TU74905 lncRNA upstream 22618 12272372 ~ 12277612 (-) False LOC113539775
TU74923 lncRNA upstream 75706 12325460 ~ 12325671 (-) True G63219
TU74974 lncRNA upstream 104638 12354392 ~ 12355772 (-) True G63267
TU75090 lncRNA upstream 235120 12484874 ~ 12489553 (-) False tmem256
TU75226 lncRNA upstream 417687 12667441 ~ 12670500 (-) True G63502
XM_026935927.2 mRNA downstream 4189 12227421 ~ 12242773 (-) True fxr2
XM_026935932.2 mRNA downstream 25023 12212987 ~ 12221939 (-) True ponzr6
XM_026935931.2 mRNA downstream 25525 12212987 ~ 12221437 (-) False ponzr6
XM_026935930.2 mRNA downstream 26683 12212987 ~ 12220279 (-) False ponzr6
XM_026936297.2 mRNA downstream 47610 12195517 ~ 12199352 (-) True rbm4.3
XM_034303416.1 mRNA upstream 3491 12253245 ~ 12256515 (-) True ugt5g1
XM_034303417.1 mRNA upstream 3491 12253245 ~ 12255102 (-) False ugt5g1
XM_026936083.2 mRNA upstream 10982 12260736 ~ 12263489 (-) True LOC113539944
XM_026936202.2 mRNA upstream 14227 12263981 ~ 12265953 (-) True ponzr4
XM_026937070.2 mRNA upstream 17683 12267437 ~ 12269217 (-) True LOC113540514
TU74378 other downstream 711949 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 1032540 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 1034028 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 1038129 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 1064649 11177711 ~ 11182313 (-) False mrpl52
TU74900 other upstream 22464 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 22618 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 22618 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 954519 13204273 ~ 13204462 (-) True LOC113540725
XR_003404087.1 other upstream 1654077 13903831 ~ 13904021 (-) True LOC113540713

Expression Profile