RNA id: TU74900


Basic Information

Item Value
RNA id TU74900
length 1515
RNA type TUCP
GC content 0.38
exon number 4
gene id LOC113539775
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12272218 ~ 12277669 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCGTCTCAAAGAGCAGTCAGTTTCTCAGTGTGTCCATCTCACGTACTGACCCTGCAGCACTTCACACAGgCATCATGGCACAGATGGTCGTGCAGCAACCTTCGCCTGTCGTAGTGGTGAACACGACACACTCCAATCAGTGGAGCTCAGGAATCTGTGACTGCTGTGACAATCTAGCAGATTGTTGTTTTGCATTCTGGTGTTTCCCCTGTTTCGCCTGCAATACGGCGAGTAATTttggagagtgtttgtgtttaccaATGCTCGATTATGGCCCGATTCCCCCAATAACCCTGGCCATGAGGGCATCAATGCGCGAGCGCTATGGCATTCAGGGATCTATATGCAATGACTGCATCTATTCATTCTTCTGCCTTCCCTGCGTTTGGTGCCAGATGTCACGAGAGATGAGAGCACGTAAACAATCAGTCACAGTAATTAACGCTCGAGCAAGATGAAGACTCATTGTCATGATCATTAATGAATATATGACATCATTAACAAAGTAAAGTACAATGATACTGTCTGTATAATCATTTACAATGTGGTAATGACTCTATATGCTGAAATGTAGTCTGTTTCTCAGTACTGTTTTTACCTGATCTAAGCACTAGAGGGAGGTGTTTGCATTCTAATGTTGCAGAAGGTAACCCTAGCTTGGACTCCTATGCTTGCAATGTTAATGCACATTTGGGGGGAAAGTGGTGGAGGAAATCTGACTATCTGTTTGTGCTGTTGAAATCAAGGGTTCAGGGTTGGAAGGTTACTCGCATCGAATAGATAGTTACTCTCTCCGGGGATAATCTGGGATGCCGGTCCATACGAGGGCACTATACaagcacacatttacacacttattcacacatGGGGCAATTTactgtagccagtccacctaccagcatgttttttggaggtgatggatagatagatagatagatagatagatagataatactGCCACAAGGCAAGAActaagtaaattaaaataaaatgctaagtTCTGAAACAACAATCgtaacactgtaaaaaaaaaaaaaaaaatagtaataaattaacaaattaaaaaatgctgtGAATTTTGCAATAATTTACTGGCAACTCGAGTTGCttataaattactgtaaattcTGCAGTAAACCATATTTACAgcaaagtactgtaatatcttgcATAGTATAAAATAGCACATAATtcagtacatttgctcatttgctcatacagtactgtaaatactacaatatacagtaaatctACAGTAAATTTACAGTGTACTACTGATTTGGCATGGTGACTTTTGTGTACATTCTTCAAAAGCAATGATCATACATGACTTATTGGCCTAAATACAAATcctatatacatacatagaaTTGAATTTTGTTATCATTAATAAAGTCTTATagcttttattttgtgtgtgataatgtgtagTAATAATGTCACTGACTGTAGCACTAGGCTACaatctttaatctttattaGATTTCATGTTATGTGTTTCCCAAATAaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74852 lncRNA downstream 149208 12067332 ~ 12123010 (-) True G63174
TU74721 lncRNA downstream 267899 12004007 ~ 12004319 (-) True G63062
TU74717 lncRNA downstream 299271 11972711 ~ 11972947 (-) True G63058
TU74670 lncRNA downstream 305322 11936771 ~ 11966896 (-) False htr2cl1
TU74690 lncRNA downstream 374117 11897845 ~ 11898101 (-) True G63031
TU74923 lncRNA upstream 47848 12325460 ~ 12325671 (-) True G63219
TU74974 lncRNA upstream 76780 12354392 ~ 12355772 (-) True G63267
TU75090 lncRNA upstream 207262 12484874 ~ 12489553 (-) False tmem256
TU75226 lncRNA upstream 389829 12667441 ~ 12670500 (-) True G63502
TU75293 lncRNA upstream 432017 12709629 ~ 12709841 (-) True G63555
XM_026937070.2 mRNA downstream 3001 12267437 ~ 12269217 (-) True LOC113540514
XM_026937071.2 mRNA downstream 3062 12267437 ~ 12269156 (-) False LOC113540514
XM_026936202.2 mRNA downstream 6265 12263981 ~ 12265953 (-) True ponzr4
XM_026936083.2 mRNA downstream 8729 12260736 ~ 12263489 (-) True LOC113539944
XM_034303416.1 mRNA downstream 15703 12253245 ~ 12256515 (-) True ugt5g1
XM_026935818.2 mRNA upstream 1077 12278689 ~ 12284886 (-) True LOC113539774
XM_026935848.2 mRNA upstream 18299 12295911 ~ 12302454 (-) True cldn7a
XM_026936949.2 mRNA upstream 31919 12309531 ~ 12323246 (-) True chrnb1l
XM_034303436.1 mRNA upstream 32546 12310158 ~ 12323429 (-) False chrnb1l
XM_034303437.1 mRNA upstream 32566 12310178 ~ 12323246 (-) False chrnb1l
TU74889 other downstream 23162 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74378 other downstream 737205 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 1057796 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 1059284 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 1063385 11208733 ~ 11208833 (-) True LOC113540753
XR_003404098.1 other upstream 926661 13204273 ~ 13204462 (-) True LOC113540725
XR_003404087.1 other upstream 1626219 13903831 ~ 13904021 (-) True LOC113540713
XR_003404068.1 other upstream 1630225 13907837 ~ 13908000 (-) True LOC113540694
XR_004578131.1 other upstream 1631555 13909167 ~ 13909357 (-) True LOC113540747
TU76338 other upstream 1955197 14232809 ~ 14243681 (-) True G64436

Expression Profile