RNA id: TU76107


Basic Information

Item Value
RNA id TU76107
length 1998
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G64222
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13738589 ~ 13743598 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaaaaaaaaaaaaaaaaaaaaaaaaaaatcaactgaaaTTGCAACATAGTATAACAAAATATTCAGTcgaacaaacaacaaacaacaataaacagCAGCTTTTGCCAGATCTTTTCCAATGTACTCAACATTGTTTTGAGgcaggtttttaaaaatagtgCCAAAGATCTCTTTCAGTCGTGAATGTCTCTGTAACACAGATTACTGTAGTACTGTACCTAAAAACAGGACCGAAGAAATCGAAAGCAGTGTTCATGCCACAACATTTCTATTACACTTCTTTTTATCTTACAAAAATTAAGAGCTAGTTTAAACATGCCCTGTTTTCTTTGAATGACAGTCCATCGCTGTGGCCTGTGCTTTCTAAGACATGAATCTGATACAAAATAGGGGGAAGAGAGGAAAGATCCCTTAACCAGAAGGGACTGAAATATCGAAGGACTTGAGTTTTAAGAGgttacattcacatttttttaactttcagtaCCAACAATTTTACAACATACCATGAAAATATCTCtagttttgtcatttttattttcagtacaagcatcaaatgaaatgtttcacaTTTGGTTTGGTTATATCAAATGTACTGAAATAAGGAGAGGGACGTGATTTCTTGTACCCAACAAACCAAAACACCTCAATCTCAAGCTGGAGATAAAGTACCATATATGTCTTTTTGTCTCACACCTGCTCTCTATAGATTTATTTCATACAAAAGGTTGACACAGACTACAATAAATTACAACAGTAAGGCAAAGATTGAGCTTTAATCCTGTGCCATGATGTTTCACTGGGGCACTCACTCAAAGCATGTGTACAATACTGAGAAattgacaaaaatgaaaaactgctggCTAATAAAAAAACTGCTCTTCTCTCAGAAGGCTTAAAGTTTCTATTCTCTTTCATcttagtgtgtgttgttttgaaTGTGTTCATAAGAACAGTGTACCGATTAGAGCTTTGCTTACTAATGCTGGGacaatttcatttaattgtgACGTTGCCTAGTTGCTGTTAATATCCAAATTAGTGTGAGCCTCTATGAGGAGCTTCCTTGTACAAGGAACCCTCAtgagcttctttcagttgtgtCAGTTATAGTAATGCTATCCGTGACCCTACGCTGGCCCTGTGAGTGCTCCGAGACTGTAGATCTCATCTGGCATTTTGTTTAGTCCAAGAATAGAcgcttcctctttttttccaccCGGCTCCTCCCCTTCTGTCAATCCTGCATATTTGGTAGTGAGGAGAAGAGGCAGTGTGCTCCCTACCAAGGAAGAGAGGAAAGGGGGAGTGGAGGACTGCGAGAGTACAGTTGGTCTCTGTCACACACGAAGAATGTACAGCACGTTGCACCTGGGGCCCAGCGTAGGGTCGACGCAGCTCAATAGCACGTCATAGAGTGCGTGACAGCCACTGAGAGTATGGGATAGCACAGATAGCGTACATGGAGGACTTCTTTTCAAGCAAAACACGCAAGTTATGGAAATAACACTTGTAAACTTACAGATGCAGTAAAAAGCGAAAGTGTAAATGTCTCTCACAGGTGAACCCCTGAAAAGTTCCTATCTGTGCATACAGTGTGTCTgcccagcaaaaaaaaaaaaaaaaagacaaaagataaTACTAAAACTTATAAGAAATGCACCTGAAATCTAAGTTAAAACGACCGCATTTTAATCAGTAATGTTTAATCAGTAAACACTGTGTACCTGTGTGGATGAGACTGCTGACAACAGCATTGGGATCTCTGCATGTCAGTGAGCAAAACCCTTTTATGCacaattaaaaagtaaaacattaaaaaacgaTCAAAATATTAAAGCGCTGACTTCAAACAACACCAACCCAGAAGATAATGCGCTCTTAAAAGAGGCGAAATTTAAAGCGAGGACATGACGAGAAAACAAAGTGGAGGTCCCTGGGGTCGTTTCTGCAGGGTGTGTGACGGGCCGGAAGTGGCTCGGTGGCTCCTCCATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578000.1 lncRNA downstream 14673 13716325 ~ 13723916 (-) True LOC117597078
TU75988 lncRNA downstream 168992 13564633 ~ 13569597 (-) True G64147
TU76015 lncRNA downstream 183512 13554864 ~ 13555077 (-) True G64164
TU76014 lncRNA downstream 184243 13554088 ~ 13554346 (-) True G64163
TU75699 lncRNA downstream 271187 13450437 ~ 13467402 (-) True G63907
TU76151 lncRNA upstream 125411 13869009 ~ 13872279 (-) True G64261
TU76137 lncRNA upstream 134432 13878030 ~ 13880728 (-) True G64252
TU76160 lncRNA upstream 145090 13888688 ~ 13890217 (-) True G64267
XR_003404036.2 lncRNA upstream 159300 13902898 ~ 13911755 (-) True LOC113540541
TU76139 lncRNA upstream 159326 13902924 ~ 13909305 (-) False G64252
XM_026936261.2 mRNA downstream 43589 13684736 ~ 13695000 (-) True usp12b
XM_026937076.2 mRNA downstream 205325 13527886 ~ 13533264 (-) True cnpy4
XM_026936111.2 mRNA downstream 217063 13505741 ~ 13521526 (-) True ntn5
XM_026936415.2 mRNA downstream 298069 13437087 ~ 13440520 (-) False zgc:194312
XM_026935899.2 mRNA downstream 348624 13388333 ~ 13389965 (-) True si:ch73-335l21.4
XM_026936327.2 mRNA upstream 3641 13747239 ~ 13797445 (-) False col4a5
XM_026936326.2 mRNA upstream 3641 13747239 ~ 13797445 (-) True col4a5
XM_034303949.1 mRNA upstream 10200 13753798 ~ 13797445 (-) False col4a5
XM_026936919.2 mRNA upstream 169085 13912683 ~ 13967911 (-) True sema4f
XM_026936736.2 mRNA upstream 274860 14018458 ~ 14033040 (-) True dok1b
XR_003404098.1 other downstream 534127 13204273 ~ 13204462 (-) True LOC113540725
TU74901 other downstream 1460920 12272372 ~ 12277669 (-) False LOC113539775
TU74900 other downstream 1460977 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other downstream 1460977 12272372 ~ 12277612 (-) False LOC113539775
TU74889 other downstream 1489533 12247274 ~ 12249056 (-) False si:dkey-165a24.9
XR_003404087.1 other upstream 160233 13903831 ~ 13904021 (-) True LOC113540713
XR_003404068.1 other upstream 164239 13907837 ~ 13908000 (-) True LOC113540694
XR_004578131.1 other upstream 165569 13909167 ~ 13909357 (-) True LOC113540747
TU76338 other upstream 489211 14232809 ~ 14243681 (-) True G64436
trnae-cuc_13 other upstream 991058 14734656 ~ 14734727 (-) True trnae-cuc_13

Expression Profile