RNA id: TU76160


Basic Information

Item Value
RNA id TU76160
length 1500
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G64267
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13888688 ~ 13890217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAATAGAGTccatattatttgtaatttaatagTTAAATTAGGAAATTCCAACAGTAAATAACAGTGAGTGCTGTTTAAACACATttgaaataattacaaaatatcCAAAGGATAAGTAAACAATAAGCAACTTCCAAAACAACTGTAAAGAGCCTTCAGTTAAACACTGATCAAACTAAACTTGGTCACCTGCTGCTGTAGCAATAcgggaataataataataataataataataataatcatcgtcatcaacACTATATGGAAAATGCCACATTTGAACACTGATGCAGCATTATTCCAGATAAttgggaaaaaacaaaaaacatttcaaatgaggggaaaaaaaagagactctTGCACAGACACAGTGGAAATGACCATATCTTACAAAGACATGCTACACTAATTTACAACCATATTAAAAGGAGCAACCTGTGATCTTAAGTGCCCTTAAGCCATAATATATCAATTATTAGAAATTTTCCTTGCCCTTTTTCATAGATCACTGGTGTTCCACATTTTACACATGGACAAGAAatctgaataatgaataatgggTAGGGAATAAGAGCTTACACCCTTTTTTGGTTACAAAGTTTCATATAACAATCACAACATACTGACATAAAACAGAAAGTGGTCAAGCCAGTAAAAGGTATCAAGTCCAAGTTAATGACAAGATGAAATATTATAAGTAAAAAACCTATTTGTACTGTCTACATTCTGATCATCTACATGTCAACACATTATAAAAAGTAATACAGCACACGTCTTGAAAGACAAACTAGAGAATTAACAtcattttacatgtgtgcatgagaataaaaaaaaaaagcactatgagtgaaaatatttaatttccacAAATTTTTCTGCCTCATATATTGGAATGGCTTAATCTGTACTCCAGAAAGTAAAGCCAAATGTTCTCTCCTGAACCTTGTCATGAatttataagaatatatataaagaaataaaaatgtacattcatTCAAAGTAGGGCTTCATTCTGTAAGACTTTTAAACACTGTTCACAACACACCATAATCAAAACAAGTCCTTTCTCAAAGACATTCCTCCACATACTGTAAATACTTCATGTTTTTAAGACTTTCTGAAAAACAGTAACTTGTCAAGCTATACATGCCTTAATTTTAGTTCCACACAGCATTAGCCAGAGAAGAGTAACTTAAGAGCTAACTCgtatgaagaaaatcattaAATCGTATAAAACACAGCTTTGTGGGATCCGAGACTAGGTTTGAAACCAAGTGCATTTGTGGTTTTCAGTGGACCAGCTCCAGCTGGCTGGCAGAGAAGGGCAGTACCCCACTCACATAGTAAGCAATGCCCAGAGAGAGCAGGGCGATGATCACTAACAACAGGAGAACCCTCCAGAAACCCAGATCCTCCACAAACTCCTGCCAGGTGGAGCGAAAACTGGACAGTACACCCTCACTGTTCTGCAGGTTGGGATTCAGCAGTGAGTGGCTCTCCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76137 lncRNA downstream 7960 13878030 ~ 13880728 (-) True G64252
TU76151 lncRNA downstream 16409 13869009 ~ 13872279 (-) True G64261
TU76107 lncRNA downstream 145090 13738589 ~ 13743598 (-) True G64222
XR_004578000.1 lncRNA downstream 164772 13716325 ~ 13723916 (-) True LOC117597078
TU75988 lncRNA downstream 319091 13564633 ~ 13569597 (-) True G64147
XR_003404036.2 lncRNA upstream 12681 13902898 ~ 13911755 (-) True LOC113540541
TU76139 lncRNA upstream 12707 13902924 ~ 13909305 (-) False G64252
TU76141 lncRNA upstream 12707 13902924 ~ 13911820 (-) False G64252
TU76189 lncRNA upstream 102354 13992571 ~ 13996399 (-) True G64294
TU76191 lncRNA upstream 108518 13998735 ~ 13999683 (-) True G64296
XM_026936327.2 mRNA downstream 91243 13747239 ~ 13797445 (-) False col4a5
XM_026936326.2 mRNA downstream 91243 13747239 ~ 13797445 (-) True col4a5
XM_034303949.1 mRNA downstream 91243 13753798 ~ 13797445 (-) False col4a5
XM_026936261.2 mRNA downstream 193688 13684736 ~ 13695000 (-) True usp12b
XM_026937076.2 mRNA downstream 355424 13527886 ~ 13533264 (-) True cnpy4
XM_026936919.2 mRNA upstream 22466 13912683 ~ 13967911 (-) True sema4f
XM_026936736.2 mRNA upstream 128241 14018458 ~ 14033040 (-) True dok1b
XM_026936012.2 mRNA upstream 151734 14041951 ~ 14054035 (-) True LOC113539907
XM_026936443.2 mRNA upstream 189488 14079705 ~ 14086981 (-) True cct7
XM_034303617.1 mRNA upstream 267219 14157436 ~ 14220288 (-) False plcb3
XR_003404098.1 other downstream 684226 13204273 ~ 13204462 (-) True LOC113540725
TU74901 other downstream 1611019 12272372 ~ 12277669 (-) False LOC113539775
TU74900 other downstream 1611076 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other downstream 1611076 12272372 ~ 12277612 (-) False LOC113539775
TU74889 other downstream 1639632 12247274 ~ 12249056 (-) False si:dkey-165a24.9
XR_003404087.1 other upstream 13614 13903831 ~ 13904021 (-) True LOC113540713
XR_003404068.1 other upstream 17620 13907837 ~ 13908000 (-) True LOC113540694
XR_004578131.1 other upstream 18950 13909167 ~ 13909357 (-) True LOC113540747
TU76338 other upstream 342592 14232809 ~ 14243681 (-) True G64436
trnae-cuc_13 other upstream 844439 14734656 ~ 14734727 (-) True trnae-cuc_13

Expression Profile