RNA id: TU78076


Basic Information

Item Value
RNA id TU78076
length 1297
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G65927
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17402559 ~ 17403879 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatatatatatatatatatatatatatatatatatatatatagtacagcAGGTCACAGAACACAGAAATcgtgtacatgtgtatgtgcatcATGGCCTGCCGTGTTGAGCCCTGTGCCCTTTGAGTTGAGGGGAAGTTGTGGTTTTGTCTCCAGAGCAGTTCAGTGTTGTTtgaattattttcttcattcattagtTCAGCCATCAACACGACATTACCAACAATGTTTATGTACATAAATGCACACATAATTTACCTGCTATTGGaagattttcagtttgtttgATACATTTAGTTCAAGCATACAGCTTACACATCTAGGAACCTACTTTGTGCAacctcatttttaaaagaacGCCGTTCAGGACTTATAACAGATATAACAGGAACTTGGTGCTGTACAGAATAAAAGGAACGGTAAGATTGAGAGAAGAAAGCTTGTTTACCAGACTCGAGCTAAAATCTATGGCTAGAGAATTTCTTTTGAGATTTCATGAACAGTTAATGGATATAAGGAAATAAGCTCCAGGTAACACAAGAGCACACTGTATGTCACACaatgttatttataatcacaataGGAGTTAAAATATGCCATGAAAAACAAacgattgatttattttatgtaaggATGTTTGCATATGTGTAAATTTGTTGATTGTCTGCTGTCAAATTTTAAAAGgcttttttatcatttatgttatgaAATGGCAGGGAGAATATTTTCATCAGATGGTCGGAAACTCTTTGTCCTTATGTGAGTGCTTTGCTAGAATGCCGTGCATGCATTCAAAGGCAGCAGTAGGCTTTGAGAACGTTGTGTTATTGTGATAGAGTGCTCTCTCAGACCATCTTCATGTaaaactttgcttttttttttttaaatccaaatggATCCTCATATGTCTGTGAACCAGTCGAgtgtataaaagaaatattatatatcTTCCCTTGGATTCTTTAGGGTCTATCTAAGGAAAATGCACGCAGATGTTGGTTTGTAGACTAATATTGTACCATGTCactctttttttgtattttaaggTTGATTTTAAGCTACTTTTACTCCTCACTACTACTAAAATTGATATTctgaaaatatacatacatgctACCTGGTAATTTAATTCACAATAAATTAAGATGAAGTATATTAATATGAATTCCAAGATACTATATAAGCAATATGTTATTTTAGtcaataaaatgatattaaaaatcactgaaaaaaatgcaaaagttttaaaaaaacatgaaaactttGGGAAATATATGttgcttctttattttgtacgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78081 lncRNA upstream 9761 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA upstream 30420 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA upstream 42990 17358486 ~ 17359569 (+) True G65939
TU77765 lncRNA upstream 631716 16770605 ~ 16770843 (+) True G65663
TU77755 lncRNA upstream 639098 16758260 ~ 16763461 (+) False LOC113539905
TU78089 lncRNA downstream 7139 17410994 ~ 17502645 (+) True G65933
TU78090 lncRNA downstream 27222 17431077 ~ 17440372 (+) True G65934
XR_004577991.1 lncRNA downstream 49591 17453446 ~ 17484922 (+) False LOC117597048
XR_004577992.1 lncRNA downstream 53890 17457745 ~ 17484922 (+) True LOC117597048
TU78323 lncRNA downstream 173249 17577104 ~ 17578946 (+) True G66124
XM_026936053.2 mRNA upstream 1171 17351919 ~ 17401388 (+) False arrb2b
XM_026936024.2 mRNA upstream 73013 17308622 ~ 17329546 (+) False mtmr1a
XM_026936020.2 mRNA downstream 1498 17405353 ~ 17419302 (+) True pelp1
XM_034303561.1 mRNA downstream 22814 17426669 ~ 17500896 (+) False alox12
XM_034303560.1 mRNA downstream 22839 17426694 ~ 17438271 (+) False alox12
XM_026936030.2 mRNA downstream 83568 17487423 ~ 17500896 (+) True alox12
XM_034303569.1 mRNA downstream 104570 17508425 ~ 17520166 (+) False si:dkey-6n21.12
XR_003404112.1 other upstream 640684 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 640912 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 641221 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 641452 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 641740 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 205849 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 360606 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 596303 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 709589 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 793457 18197312 ~ 18208564 (+) True G66492

Expression Profile